Browse Element(s) Details


Os.49483.2.S1_x_at

Description gb:AK059184.1
DB_XREF= gi:32969202
TID=Os.49483.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G07, full insert sequence.
FL= gb:AK059184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g430405/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43010Os.15811.1.S1_at10/117+25760117..25763970expressed protein
LOC_Os07g43010OsAffx.16689.1.S1_at4/117+25760117..25763970expressed protein
LOC_Os07g43020Os.51780.1.S1_at11/117+25772775..25773645expressed protein
LOC_Os07g43030Os.7722.1.S1_at11/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43030OsAffx.5617.1.S1_x_at10/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43040Os.50778.1.S1_at11/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43040Os.49483.2.S1_x_at5/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43050Os.11117.1.S1_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43050Os.11117.1.S2_at11/117+25791825..25795972RNA recognition motif family protein, expressed
LOC_Os07g43060OsAffx.16690.1.S1_s_at10/117+25796201..25799082Transcription initiation protein Spt4 containing protein, expressed
LOC_Os07g43070Os.11123.1.S1_at11/117+25802650..25806058expressed protein
LOC_Os07g43080NANA7+25812937..25813662hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009767biological_processphotosynthetic electron transport
GO:0009941cellular_componentchloroplast envelope
GO:0005375molecular_functioncopper ion transporter activity
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49483.2.S1_x_at--241--1171Chr03:4196209..4196233 (25 bp)
AGTAACCTGTTCTTCATTGATTTGG
NONE
Os.49483.2.S1_x_at--121--6531Chr03:4196191..4196215 (25 bp)
GATTTGGTCATCATTCCTAACTTAA
NONE
Os.49483.2.S1_x_at--1041--9591Chr03:4196165..4196189 (25 bp)
TCATTAGTCCTGAATCCGGCATCGC
NONE
Os.49483.2.S1_x_at--87--4951Chr03:4196125..4196149 (25 bp)
GCATTGGGTTTGCTATCTTCAACCA
NONE
Os.49483.2.S1_x_at--522--7531Chr03:4196084..4196108 (25 bp)
GTGGCATGAGCCAGGACCATCTCAG
NONE
Os.49483.2.S1_x_at--1009--1811Chr03:4196048..4196072 (25 bp)
ACCCACATGGTGATTTCTCAGAGTT
NONE
Os.49483.2.S1_x_at--66--671Chr07:25790812..25790836 (25 bp)
ATGCAAGGATCTTGTACCCCAGCTT
LOC_Os07g43040
Os.49483.2.S1_x_at--985--3531Chr07:25790844..25790868 (25 bp)
CATCCATGTCTTGTGCTGAGCAGTT
LOC_Os07g43040
Os.49483.2.S1_x_at--246--7751Chr07:25790871..25790895 (25 bp)
GGTGAGTCGTCTAACCAATGGTACT
LOC_Os07g43040
Os.49483.2.S1_x_at--1035--1731Chr07:25790904..25790928 (25 bp)
ACCTTGTGCATGTTGATCCGTACTA
LOC_Os07g43040
Os.49483.2.S1_x_at--927--4011Chr07:25790922..25790946 (25 bp)
CGTACTATACGTTTGTTGATCATCA
LOC_Os07g43040
Target Sequence 
AGTAACCTGTTCTTCATTGATTTGGTCATCATTCCTAACTTAATTCATTAGTCCTGAATCCGGCATCGCCAACAGTACCT
CCCAGCATTGGGTTTGCTATCTTCAACCAAATTCTACCATAAAGCGTGGCATGAGCCAGGACCATCTCAGTGCCGGTGAG
CACCCACATGGTGATTTCTCAGAGTTTGCAATGTACTACTATTTGATTTCTTGATGTGGAAATAAAAAGAATAAAAACAT
GACCAATCACAATGCAAGGATCTTGTACCCCAGCTTCTCTCTTCATCCATGTCTTGTGCTGAGCAGTTATGGTGAGTCGT
CTAACCAATGGTACTGTTGTTGTACCTTGTGCATGTTGATCCGTACTATACGTTTGTTGATCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49483.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis