Browse Element(s) Details


Os.49485.1.S1_at

Description gb:AK073366.1
DB_XREF= gi:32983389
TID=Os.49485.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030H08, full insert sequence.
FL= gb:AK073366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2577010/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25700OsAffx.6398.1.S1_at11/119+15421387..15423389hypothetical protein
LOC_Os09g25710OsAffx.6399.1.S1_at11/119+15425337..15425864expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_s_at11/119+15429675..15430148expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_at11/119+15429675..15430148expressed protein
LOC_Os09g25730NANA9+15430738..15432537transposon protein, putative, unclassified
LOC_Os09g25740OsAffx.30020.1.A1_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_x_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_at11/119+15437140..15439298expressed protein
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed
LOC_Os09g25770Os.49485.1.S1_at10/119+15446684..15448981Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.54575.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.52700.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25800OsAffx.30021.1.S1_at11/119+15456698..15458212nodulin MtN21 family protein, putative
LOC_Os09g25810Os.12092.1.S1_at10/119+15463769..15467832Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25820OsAffx.17897.1.S1_at9/119+15469871..15470315hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49485.1.S1_at--972--291Chr09:15447499..15447523 (25 bp)
ATAGCGCAATCTTTACACCACTGAG
LOC_Os09g25770
Os.49485.1.S1_at--865--3111Chr09:15447459..15447483 (25 bp)
AATATTATCTACCATCTTCCTTCAT
LOC_Os09g25770
Os.49485.1.S1_at--1021--3551Chr09:15447247..15447271 (25 bp)
CATCATTGGGTTGTACGTTGTGCTA
LOC_Os09g25770
Os.49485.1.S1_at--680--7551Chr09:15447192..15447216 (25 bp)
GGGCTGACCATCCTGTCAAATGATT
LOC_Os09g25770
Os.49485.1.S1_at--1129--8171Chr09:15447120..15447144 (25 bp)
GGAACCAATCTTTCAGTACCACTGT
LOC_Os09g25770
Os.49485.1.S1_at--543--2911Chr09:15446864..15446888 (25 bp)
AAGGAAAATACTGCCGTCAGCCTGT
LOC_Os09g25770
Os.49485.1.S1_at--411--7111Chr09:15446849..15446873 (25 bp)
GTCAGCCTGTCACCGATAGAGCATT
LOC_Os09g25770
Os.49485.1.S1_at--7--9831Chr09:15446817..15446841 (25 bp)
TAAAACGGTCGAATTCCTTGTTCAG
LOC_Os09g25770
Os.49485.1.S1_at--1070--131Chr09:15446794..15446818 (25 bp)
AGGCCTCCTTTTGAATCAGGGCTTT
LOC_Os09g25770
Os.49485.1.S1_at--574--2252Chr09:15446735..15446759 (25 bp)
AAATTTCCTATCATTGTACCCATCA
LOC_Os09g25770
Os.49485.1.S1_at--1020--5591NONE
GAAATTCTTTTGGAGTGGCTCACTG
NONE
Target Sequence 
ATAGCGCAATCTTTACACCACTGAGTGCTGTGATTACAACAATATTATCTACCATCTTCCTTCATGAGGAACTTCATATA
GGAAGCATATTAGGTGCAATTGCAATCATCATTGGGTTGTACGTTGTGCTATGGGGCAAAGCAGATGATGCAAAGAGTGA
GGGGCTGACCATCCTGTCAAATGATTCCNAAAGGATAACTGAACCTGAATGTACAGGCGTCAAAGTTGAATGTGGAACCA
ATCTTTCAGTACCACTGTTATCTGAGTCCTTNACCAGACTGAATGAACAAATGGATAATCTGGCAAAATGCTCAACATGA
TGCTTGACGAAGAATCGAAGATTGCTGGAGGTTGCTGTCAAAACTGATATAACCTTCCATGTAAAAGGAAAATACTGCCG
TCAGCCTGTCACCGATAGAGCATTTCGTAGTTAAAACGGTCGAATTCCTTGTTCAGGCCTCCTTTTGAATCAGGGCTTTG
TGGAGGAATTTTGTATGACTCAAATGCTATNAAAAATTTCCTATCATTGTACCCATCANAATCCTATGAAATTCTTTTGG
AGTGGCTCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis