Browse Element(s) Details


Os.49495.2.S1_at

Description gb:AK107444.1
DB_XREF= gi:32992653
TID=Os.49495.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B09, full insert sequence.
FL= gb:AK107444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g152506/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15200NANA3+8300441..8300641hypothetical protein
LOC_Os03g15210NANA3+8301888..8302739hypothetical protein
LOC_Os03g15220Os.50820.1.S1_at10/113+8306425..8307634expressed protein
LOC_Os03g15230OsAffx.27508.42.S1_s_at11/113+8308170..8310796expressed protein
LOC_Os03g15240Os.49495.3.S1_at11/113+8316422..8318809expressed protein
LOC_Os03g15250OsAffx.12872.1.S1_x_at11/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15250Os.49495.2.S1_at6/113+8318994..8323694Protein kinase domain containing protein, expressed
LOC_Os03g15260OsAffx.25094.1.S1_at10/113+8325505..8327241hypothetical protein
LOC_Os03g15270Os.53936.1.S1_at11/113+8331248..8332771expressed protein
LOC_Os03g15280NANA3+8340170..8340385hypothetical protein
LOC_Os03g15290Os.24872.2.S1_at1/113+8348400..8350031Autophagy protein Apg6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49495.2.S1_at--1032--3191Chr03:8319448..8319472 (25 bp)
CAATGGGTTACCTATCCCCTTAGCT
LOC_Os03g15250
Os.49495.2.S1_at--80--4191Chr03:8319432..8319456 (25 bp)
CCCTTAGCTTCTCCGCACAGGGAAG
LOC_Os03g15250
Os.49495.2.S1_at--252--8211Chr03:8319412..8319436 (25 bp)
GGAAGGCATCACCAGCTACTGATGT
LOC_Os03g15250
Os.49495.2.S1_at--723--1971Chr03:8319395..8319419 (25 bp)
ACTGATGTTTTTGCCTTTGGGATGT
LOC_Os03g15250
Os.49495.2.S1_at--1056--10151Chr03:8319385..8319409 (25 bp)
TTGCCTTTGGGATGTTTCTTTTGGA
LOC_Os03g15250
Os.49495.2.S1_at--1075--10312Chr03:8319371..8319395 (25 bp)
TTTCTTTTGGAGGTGGCCTGTGGCC
LOC_Os03g15250
Os.49495.2.S1_at--573--6291Chr03:8318974..8318998 (25 bp)
GATGATGAGGACTTGTGGTTTACCA
NONE
Os.49495.2.S1_at--84--7511Chr03:8318960..8318984 (25 bp)
GTGGTTTACCATTGCTTGTTAGTTT
NONE
Os.49495.2.S1_at--995--1731Chr03:8318953..8318977 (25 bp)
ACCATTGCTTGTTAGTTTTCTGTAT
NONE
Os.49495.2.S1_at--41--7011Chr03:8318911..8318935 (25 bp)
GTACTTATAAGTCTTAATGCCTTTA
NONE
Os.49495.2.S1_at--64--9831Chr03:8318880..8318904 (25 bp)
TAACAAGCTGACCACTCTATGGGCT
NONE
Target Sequence 
CAATGGGTTACCTATCCCCTTAGCTTCTCCGCACAGGGAAGGCATCACCAGCTACTGATGTTTTTGCCTTTGGGATGTTT
CTTTTGGAGGTGGCCTGTGGCCGAAGGCCTCTGGAACATGACCTCCAGGACAACCAGGTCGTGCTACTGGATTGGGTGCT
TGAGAACTGGAACAGAGGACAAATTCTTGACGTGGTGGATCCCAGGCTCAGCAGTGAGTATGTTGCCGAGGAGGCGAACT
TGGTGCTGAAGCTGGGGCTCCTCTGCTTGCAGCCGTTGCCTAGTGCACGGCCGAGCATGCGGCAAGTCCTGCAGTACCCT
AATGGCACTGTGCTGGCACCAGAGATGTTGCCGACAGACTTGGACTATGATACACTAATGTTTCTGCAGAATGAAAGGGT
TGAGTCATACGCCATGCTGGAAGCATCCTCATTGGCAACAACAGTTGGCCCTGGGTCTGATCTTTCAGGAGGAAGATGAT
GAGGACTTGTGGTTTACCATTGCTTGTTAGTTTTCTGTATGTTTATCTAACAAGTTTGTACTTATAAGTCTTAATGCCTT
TAATATAATAACAAGCTGACCACTCTATGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49495.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis