Browse Element(s) Details


Os.49504.1.S1_at

Description gb:AK072006.1
DB_XREF= gi:32982029
TID=Os.49504.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095J19, full insert sequence.
FL= gb:AK072006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0388411/11TNP2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03860Os.47910.1.S1_at11/114+1741578..1746940expressed protein
LOC_Os04g03870OsAffx.13649.1.S1_at11/114+1754143..1755585Cytochrome P450 family protein, expressed
LOC_Os04g03880OsAffx.13650.1.S1_at11/114+1757251..1761044hypothetical protein
LOC_Os04g03884Os.49504.1.S1_at11/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03884Os.51175.1.S1_x_at6/114+1761998..1765432TNP2, putative, expressed
LOC_Os04g03890OsAffx.25857.1.S1_at11/114+1767030..1768484Cytochrome P450 family protein
LOC_Os04g03910OsAffx.3714.1.S1_at11/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.48715.1.A1_x_at4/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_x_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03910Os.5139.2.S1_at1/114+1775700..1777595hypothetical protein
LOC_Os04g03920Os.54951.1.S1_at11/114+1778564..1780107expressed protein
LOC_Os04g03930OsAffx.3715.1.S1_at11/114+1780402..1782118hypothetical protein
LOC_Os04g03940NANA4+1782696..1787834retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03950OsAffx.1412.2.S1_at2/114+1789130..1792056retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49504.1.S1_at--174--2751Chr04:1765105..1765129 (25 bp)
AAGAACTGGAAGCTATACTGTCAAG
LOC_Os04g03884
Os.49504.1.S1_at--648--6531Chr04:1765295..1765319 (25 bp)
GATTTCTGTATTTGAGTTGCAATCT
LOC_Os04g03884
Os.49504.1.S1_at--260--6672Chr04:1765310..1765334 (25 bp)
GTTGCAATCTCATATTGGTATGCTC
LOC_Os04g03884
Os.49504.1.S1_at--62--8591Chr04:1765325..1765349 (25 bp)
TGGTATGCTCACAATTTGTTTGCGA
LOC_Os04g03884
Os.49504.1.S1_at--337--3751Chr04:1765332..1765356 (25 bp)
CTCACAATTTGTTTGCGAGCGCATT
LOC_Os04g03884
Os.49504.1.S1_at--132--10611Chr04:1765344..1765368 (25 bp)
TTGCGAGCGCATTGTGGAAAAGACC
LOC_Os04g03884
Os.49504.1.S1_at--990--8152Chr04:1765359..1765383 (25 bp)
GGAAAAGACCACTAATTACTAATGA
LOC_Os04g03884
Os.49504.1.S1_at--1143--132Chr04:1765373..1765397 (25 bp)
ATTACTAATGATGCAATGAACGCCA
LOC_Os04g03884
Os.49504.1.S1_at--658--672Chr04:1765388..1765412 (25 bp)
ATGAACGCCATGGATCTTCTTGCTG
LOC_Os04g03884
Os.49504.1.S1_at--42--3512Chr04:1765396..1765420 (25 bp)
CATGGATCTTCTTGCTGGCATTTTA
LOC_Os04g03884
Os.49504.1.S1_at--173--7972Chr04:1765399..1765423 (25 bp)
GGATCTTCTTGCTGGCATTTTAAAA
LOC_Os04g03884
Target Sequence 
AAGAACTGGAAGCTATACTGTCAAGATTTTGTACAAAGTGCAATATAGACACTTGTGATTGTGTGATCATCATATGCTGG
AGGATGAAAACAAATTGCACTTTACAGTAGCATCATGTCATTCTTGTTGATTATAGTTTTGTCCTGTGACTGAGAAATCA
TTGTTGTTATTAGTTTTTGATCTTAAATTTGATTTCTGTATTTGAGTTGCAATCTCATATTGGTATGCTCACAATTTGTT
TGCGAGCGCATTGTGGAAAAGACCACTAATTACTAATGATGCAATGAACGCCATGGATCTTCTTGCTGGCATTTTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis