Browse Element(s) Details


Os.49520.1.A1_at

Description gb:AK109550.1
DB_XREF= gi:32994759
TID=Os.49520.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H12, full insert sequence.
FL= gb:AK109550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g064605/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein
LOC_Os02g06440OsAffx.11917.1.S1_x_at9/112+3216940..3217809hypothetical protein
LOC_Os02g06440OsAffx.11917.1.S1_at8/112+3216940..3217809hypothetical protein
LOC_Os02g06450OsAffx.2521.1.S1_at11/112+3219169..3219516hypothetical protein
LOC_Os02g06460Os.49520.1.A1_at5/112+3220489..3225189hypothetical protein
LOC_Os02g06460Os.8872.1.S1_at1/112+3220489..3225189hypothetical protein
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06470Os.8872.2.S1_at11/112+3227679..3229222F-box domain containing protein, expressed
LOC_Os02g06490OsAffx.24131.1.S1_at10/112+3234378..3237519Vacuolar protein sorting-associated protein VPS4, putative
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49520.1.A1_at--724--991Chr02:3221508..3221532 (25 bp)
AGGATGTTATTATTTCTGGATGCAA
LOC_Os02g06460
Os.49520.1.A1_at--356--3411Chr02:3221402..3221422 (21 bp)
CAGAAGGTATCGGAGCGGTGCATAT
LOC_Os02g06460
Os.49520.1.A1_at--1019--4671Chr02:3221388..3221412 (25 bp)
GCGGTGCATATAAGCTCCATAGAAA
LOC_Os02g06460
Os.49520.1.A1_at--828--6571Chr02:3221243..3221267 (25 bp)
GATTCTACACGTTTTTAACCATGTC
LOC_Os02g06460
Os.49520.1.A1_at--682--3511NONE
CATGTCAATGGCACTGGCAGATCTT
NONE
Os.49520.1.A1_at--868--8251Chr02:3220531..3220555 (25 bp)
GGCAGATCTTGACATTCTACCACAT
LOC_Os02g06460
Os.49520.1.A1_at--174--5231Chr02:3220445..3220469 (25 bp)
GAATTTCCACGATCGTATCCATGTA
NONE
Os.49520.1.A1_at--286--6931Chr02:3220382..3220406 (25 bp)
GTAGTCCTGATTGAAAACTTTCTGA
NONE
Os.49520.1.A1_at--166--10231Chr02:3220303..3220327 (25 bp)
TATTGAGTTGTAGTCGTCCGGTAGC
NONE
Os.49520.1.A1_at--653--7251Chr02:3220288..3220312 (25 bp)
GTCCGGTAGCGTTGTTTCTGCTTTG
NONE
Os.49520.1.A1_at--202--6751Chr02:3220242..3220266 (25 bp)
GTTCAGATTTTTGAGGCAGTTTACC
NONE
Target Sequence 
AGGATGTTATTATTTCTGGATGCAAGTCAGAAGGTATCGGAGCGGTGCATATAAGCTCCATAGAAAGTGGAAAATGCATT
NCAGACATCAATACCAAGGTTATTGTTNCTGNCATTGTCATATAATCCTGAGTTGAATGAGATTTNCATTGGGACGGCAA
AGGGGAAGGTGNCAAGTATGGAGTGNCCTGATTCTACACGTTTTTAACCATGTCAATGGCACTGGCAGATCTTGACATTC
TACCACATCAGATACNGCAGAAGTTGAAAAGCCCCAATAAAGATAGCTGATCNTGATTGAAAACTTTCTGAATTTCCACG
ATCGTATCCATGTAAAACTTCAAAAAATGAAATGGATGGCGNCTTATTGAGTTGTAGTCCTGATTGAAAACTTTCTGAAT
TTCTCCACNATCGTATCCATGTAAAACTTCAAACAATGAAATGGATGGCGNCTTATTGAGTTGTAGTCGTCCGGTAGCGT
TGTTTCTGCTTTGTTCATTCATCAATACTGGGATGTTCAGATTTTTGAGGCAGTTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49520.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis