Browse Element(s) Details


Os.49531.1.S1_at

Description gb:AK063110.1
DB_XREF= gi:32973128
TID=Os.49531.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D06, full insert sequence.
FL= gb:AK063110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g104009/11Electron transfer flavoprotein beta-subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10380Os.24059.1.A1_at9/114+5589001..5610285glycine-rich protein, putative, expressed
LOC_Os04g10390OsAffx.25108.4.S1_s_at11/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10390OsAffx.25108.1.S1_x_at5/114+5612236..5614112transposon protein, putative, unclassified
LOC_Os04g10400Os.49531.1.S1_at9/114+5616756..5620495Electron transfer flavoprotein beta-subunit, putative, expressed
LOC_Os04g10410OsAffx.25959.1.S1_at11/114+5624937..5629621Amidase family protein, expressed
LOC_Os04g10420Os.54559.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420Os.37514.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.3763.1.S1_s_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.23335.1.S1_x_at8/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.20160.1.S1_x_at1/114+5635855..5646506expressed protein
LOC_Os04g10420Os.54153.1.S1_at1/114+5635855..5646506expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49531.1.S1_at--690--3531NONE
CATCCTCGGCAAGCAGGCAATTGAT
NONE
Os.49531.1.S1_at--841--3891Chr04:5618482..5618506 (25 bp)
CTGGGTTGCTTAATTGGCCACAAGG
LOC_Os04g10400
Os.49531.1.S1_at--250--8451Chr04:5617287..5617311 (25 bp)
TGGCGGAATCGAGACCATTAGCTTG
LOC_Os04g10400
Os.49531.1.S1_at--1076--131Chr04:5617271..5617295 (25 bp)
ATTAGCTTGGATTTGCCTGCAGTTA
LOC_Os04g10400
Os.49531.1.S1_at--441--6791Chr04:5617067..5617274 (25 bp)
GTTATCACCACGGATTTGAGACTGA
LOC_Os04g10400
Os.49531.1.S1_at--608--6931Chr04:5616935..5616959 (25 bp)
GTAGTTGAGGTCACTGAACCACCTA
LOC_Os04g10400
Os.49531.1.S1_at--812--5491Chr04:5616907..5616931 (25 bp)
GAAAAGCCGGTGTCATTCTTTCATC
LOC_Os04g10400
Os.49531.1.S1_at--683--7451Chr04:5616898..5616922 (25 bp)
GTGTCATTCTTTCATCCGTCGATGA
LOC_Os04g10400
Os.49531.1.S1_at--298--4051Chr04:5616879..5616903 (25 bp)
CGATGAGCTCGTTGACAGGTTGAAA
LOC_Os04g10400
Os.49531.1.S1_at--53--5411Chr04:5616851..5616875 (25 bp)
GAAGCCCGTGTTTTATAACATTCTT
LOC_Os04g10400
Os.49531.1.S1_at--992--5111Chr04:5616756..5616780 (25 bp)
GCAAATAAAAATGTGGCGTTCCCGT
NONE
Target Sequence 
CATCCTCGGCAAGCAGGCAATTGATGATGATTGCAACCAAACAGGACAAATGCTANCTGGGTTGCTTAATTGGCCACAAG
GAACCTTTGCCTCAAAGGTTATATTGAACAAGGAAAAGGCTACTGTGGAGAGAGAGGTCGATGGCGGAATCGAGACCATT
AGCTTGGATTTGCCTGCAGTTATCACCACGGATTTGAGACTGAACCAACCAAGGTATGCAACATTGCCAAACATAATGAA
GGCAAAATCAAAAGTCATCAAGAAAGTCACCCCCGAAGATCTGGATGTAGATATCAGATCAGACATGGAAGTAGTTGAGG
TCACTGAACCACCTAAGAGAAAAGCCGGTGTCATTCTTTCATCCGTCGATGAGCTCGTTGACAGGTTGAAAAATGAAGCC
CGTGTTTTATAACATTCTTTGTACTAATGCTCATGAGCTAAGGAATGTGGCATATGCAAATAAAGTGTAGTTATAAATGG
TCATCGTATGCAAATAAAAATGTGGCGTTCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis