Browse Element(s) Details


Os.49582.1.S1_at

Description gb:AK065103.1
DB_XREF= gi:32975121
TID=Os.49582.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001N07, full insert sequence.
FL= gb:AK065103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4593011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45870Os.53134.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45870Os.53054.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45880OsAffx.12512.1.S1_at11/112+27959724..27960431expressed protein
LOC_Os02g45890OsAffx.2974.1.S1_s_at11/112+27961606..27962975Sulfotransferase domain containing protein, expressed
LOC_Os02g45900OsAffx.2975.1.S1_at11/112+27964235..27966164hypothetical protein
LOC_Os02g45910OsAffx.12696.1.S1_at11/112+27971718..27973941tRNA-splicing endonuclease positive effector, putative
LOC_Os02g45920Os.17229.1.S1_at10/112+27979070..27983486expressed protein
LOC_Os02g45930Os.49582.1.S1_at11/112+27983621..27984706expressed protein
LOC_Os02g45940OsAffx.24745.1.S1_at11/112+27988208..27988861Histone H4, putative, expressed
LOC_Os02g45950OsAffx.12513.1.S1_at10/112+27989249..27992709expressed protein
LOC_Os02g45960Os.35344.18.S1_x_at11/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960Os.35344.3.S1_x_at9/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_x_at4/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45960OsAffx.22940.5.S1_at3/112+27994680..28001388transposon protein, putative, Mutator sub-class
LOC_Os02g45969NANA2+28004107..28005249NA
LOC_Os02g45980Os.54682.1.S1_at10/112+28008953..28014651Regulator of chromosome condensation family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49582.1.S1_at--681--6031Chr02:27984278..27984302 (25 bp)
GAGATGTCCGACCTCATGACGCAGC
LOC_Os02g45930
Os.49582.1.S1_at--160--8191Chr02:27984042..27984066 (25 bp)
GGAAGCGCCTCAAGCCGTCGCAGAG
LOC_Os02g45930
Os.49582.1.S1_at--517--8471Chr02:27983847..27983871 (25 bp)
TGGCAGCTAAGTTTCTCGTCGTTAA
LOC_Os02g45930
Os.49582.1.S1_at--139--10311Chr02:27983836..27983860 (25 bp)
TTTCTCGTCGTTAACTAGGTAGTAG
LOC_Os02g45930
Os.49582.1.S1_at--690--5011Chr02:27983794..27983818 (25 bp)
GCAGTCGAAGCAACGTGTTTACCCG
LOC_Os02g45930
Os.49582.1.S1_at--632--7411Chr02:27983780..27983804 (25 bp)
GTGTTTACCCGTCTGTACATAAGTA
LOC_Os02g45930
Os.49582.1.S1_at--1046--351Chr02:27983762..27983786 (25 bp)
ATAAGTACTCTGAATGACCGGCATT
LOC_Os02g45930
Os.49582.1.S1_at--285--3011Chr02:27983750..27983774 (25 bp)
AATGACCGGCATTTTCGCTGTTTGG
LOC_Os02g45930
Os.49582.1.S1_at--220--172Chr02:27983740..27983764 (25 bp)
ATTTTCGCTGTTTGGTGGTCCATTT
LOC_Os02g45930
Os.49582.1.S1_at--470--7771Chr02:27983724..27983748 (25 bp)
GGTCCATTTCCACTGTCCGTGGTAA
LOC_Os02g45930
Os.49582.1.S1_at--1096--4231Chr02:27983708..27983732 (25 bp)
CCGTGGTAATTTGTTGGGTGAGCTT
LOC_Os02g45930
Target Sequence 
GAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCAGTCGTTCGC
GTCGCTGGCGGCGGTCGCCTCGCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGG
GAGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGTCGTCGCCGGCGCCAAGAAG
GCGACCGCGAGGGCCGCCCTCTCGATGCTCGCCGCCTCGCCGAGGCGGCCGCCGCTGGCCGCGCCGGCGAGGCCGGAGGG
GGTGGCAGCTAAGTTTCTCGTCGTTAACTAGGTAGTAGAAAGTTTGGTGATAGTTGCAGTCGAAGCAACGTGTTTACCCG
TCTGTACATAAGTACTCTGAATGACCGGCATTTTCGCTGTTTGGTGGTCCATTTCCACTGTCCGTGGTAATTTGTTGGGT
GAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis