Browse Element(s) Details


Os.49606.1.S1_at

Description gb:AK065132.1
DB_XREF= gi:32975150
TID=Os.49606.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001P15, full insert sequence.
FL= gb:AK065132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3777011/11RWD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37740OsAffx.21224.1.S1_at11/111+21436104..21436938hypothetical protein
LOC_Os01g37740Os.51882.1.S1_at1/111+21436104..21436938hypothetical protein
LOC_Os01g37750Os.28823.1.S1_at10/111+21441604..21442638Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g37760Os.19115.1.S1_at11/111+21445766..21451610Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein, expressed
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49606.1.S1_at--572--9771Chr01:21452004..21452028 (25 bp)
TAAGGCTTCAAAACCATAGAAGAGA
LOC_Os01g37770
Os.49606.1.S1_at--807--3271Chr01:21451996..21452020 (25 bp)
CAAAACCATAGAAGAGAGCAAAAAT
LOC_Os01g37770
Os.49606.1.S1_at--610--8771Chr01:21451972..21451996 (25 bp)
TGTTTTAGGGAAGCACAATGTGGTT
LOC_Os01g37770
Os.49606.1.S1_at--978--651Chr01:21451904..21451928 (25 bp)
ATGAATTGGTTTGCCTGCTGATGAA
LOC_Os01g37770
Os.49606.1.S1_at--897--5191Chr01:21451902..21451926 (25 bp)
GAATTGGTTTGCCTGCTGATGAATA
LOC_Os01g37770
Os.49606.1.S1_at--571--3171Chr01:21451901..21451925 (25 bp)
AATTGGTTTGCCTGCTGATGAATAC
LOC_Os01g37770
Os.49606.1.S1_at--400--31Chr01:21451900..21451924 (25 bp)
ATTGGTTTGCCTGCTGATGAATACC
LOC_Os01g37770
Os.49606.1.S1_at--244--10851Chr01:21451899..21451923 (25 bp)
TTGGTTTGCCTGCTGATGAATACCT
LOC_Os01g37770
Os.49606.1.S1_at--91--8591Chr01:21451898..21451922 (25 bp)
TGGTTTGCCTGCTGATGAATACCTT
LOC_Os01g37770
Os.49606.1.S1_at--260--6851Chr01:21451896..21451920 (25 bp)
GTTTGCCTGCTGATGAATACCTTCG
LOC_Os01g37770
Os.49606.1.S1_at--878--10271Chr01:21451895..21451919 (25 bp)
TTTGCCTGCTGATGAATACCTTCGA
LOC_Os01g37770
Target Sequence 
TAAGGCTTCAAAACCATAGAAGAGAGCAAAAATGTTTTAGGGAAGCACAATGTGGTTATATAATATTATAGGTGAAGCCT
ACCATTTTGTGCGTTTTCCCATGAATTGGTTTGCCTGCTGATGAATACCTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis