Browse Element(s) Details


Os.49627.1.S1_at

Description gb:AK105605.1
DB_XREF= gi:32990814
TID=Os.49627.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49627 (NCBI UniGene Cluster)
UG_TITLE=MRNA for ascorbate oxidase, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A11, full insert sequence.
FL= gb:AK105605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3715011/11L-ascorbate oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37130NANA6+21930577..21930972hypothetical protein
LOC_Os06g37140Os.36149.1.S1_x_at2/116+21935890..21942002expressed protein
LOC_Os06g37140OsAffx.8676.1.S1_at2/116+21935890..21942002expressed protein
LOC_Os06g37150Os.49627.1.S1_at11/116+21950204..21954135L-ascorbate oxidase, putative, expressed
LOC_Os06g37150Os.49627.2.S1_x_at6/116+21950204..21954135L-ascorbate oxidase, putative, expressed
LOC_Os06g37160Os.15320.1.S1_at10/116+21954184..21958747Endomembrane protein 70 containing protein, expressed
LOC_Os06g37170NANA6+21960364..21960660hypothetical protein
LOC_Os06g37180Os.8065.1.S1_at11/116+21962111..21967776Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os06g37190OsAffx.15790.1.S1_at2/116+21975117..21975752hypothetical protein
LOC_Os06g37200OsAffx.27974.1.S1_at11/116+21977311..21977643hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
GO:0008447molecular_functionL-ascorbate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49627.1.S1_at--810--8152Chr10:2293470..2293490 (21 bp)
GGAACACGGCGGTGGTCTTCCCGCA
NONE
Os.49627.1.S1_at--275--1951Chr06:21953710..21953734 (25 bp)
ACGGCGCTTCGGTTCGTCGCCAACA
LOC_Os06g37150
Os.49627.1.S1_at--917--3731Chr06:21953945..21953969 (25 bp)
CTCAGCATGCCCATTCCAGTTAAAT
LOC_Os06g37150
Os.49627.1.S1_at--972--6731Chr06:21953963..21953987 (25 bp)
GTTAAATGCCATTTTTGCCGTAACA
LOC_Os06g37150
Os.49627.1.S1_at--15--4451Chr06:21953970..21953994 (25 bp)
GCCATTTTTGCCGTAACATTGTGAT
LOC_Os06g37150
Os.49627.1.S1_at--514--7051Chr06:21953982..21954006 (25 bp)
GTAACATTGTGATTGGCCACTGCGA
LOC_Os06g37150
Os.49627.1.S1_at--722--31Chr06:21953987..21954011 (25 bp)
ATTGTGATTGGCCACTGCGAAATAA
LOC_Os06g37150
Os.49627.1.S1_at--396--8451Chr06:21953996..21954020 (25 bp)
GGCCACTGCGAAATAAGATCACTCA
LOC_Os06g37150
Os.49627.1.S1_at--1155--3071Chr06:21954007..21954031 (25 bp)
AATAAGATCACTCACTGATGAAGAG
LOC_Os06g37150
Os.49627.1.S1_at--658--10451Chr06:21954036..21954060 (25 bp)
TTAGATTGTTTGGTCATATGCATGC
LOC_Os06g37150
Os.49627.1.S1_at--61--2991Chr06:21954087..21954111 (25 bp)
AATGTCCATGTTTGCTAATTAAGAT
LOC_Os06g37150
Target Sequence 
GGAACACGGCGGTGGTCTTCCCGCACGGGTGGACGGCGCTTCGGTTCGTCGCCAACAACACCGGCGCGTGGGCGTTCCAC
TGCCACATCGAGCCGCACCTCCACATGGGCATGGGCGTCGTCTTCGTCGAGGGGGAGGACAGGATGCACGAGCTCGACGT
GCCCAAGGACGCCATGGCGTGCGGCCTCGTCGCCAGGACGGCNGCCACGCCGCTCACCCCGGCAACGCCGCTGCCTCCGT
CGCCGGCGCCGGCGCCATGAGCTCCTCCTCAGCATGCCCATTCCAGTTAAATGCCATTTTTGCCGTAACATTGTGATTGG
CCACTGCGAAATAAGATCACTCACTGATGAAGAGTGGTTTAGATTGTTTGGTCATATGCATGCNCAATAATCTCATGTAA
CTAAGAAATAATGTCCATGTTTGCTAATTAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis