Browse Element(s) Details

Os.49667.1.S1_at

Description

gb:AK066485.1
DB_XREF= gi:32976503
TID=Os.49667.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068J24, full insert sequence.
FL= gb:AK066485.1 gb:AK069536.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04680	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04610	Os.5449.1.S2_at	11/11	6	+	2008997..2014660	ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04610	Os.5449.1.S1_at	11/11	6	+	2008997..2014660	ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04620	Os.49218.1.S1_at	11/11	6	+	2016779..2018352	GDP-mannose 4,6 dehydratase 1, putative, expressed
LOC_Os06g04630	OsAffx.15264.1.S1_at	11/11	6	+	2020817..2021420	hypothetical protein
LOC_Os06g04640	Os.11713.2.S1_x_at	11/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640	Os.11713.2.S1_at	11/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640	Os.11713.1.S1_x_at	5/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04650	Os.6734.1.S1_at	11/11	6	+	2027123..2029229	Peptide methionine sulfoxide reductase family protein, expressed
LOC_Os06g04660	Os.11678.1.S1_at	11/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04660	Os.11678.2.S1_at	9/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_x_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04680	Os.49667.1.S1_at	10/11	6	+	2038752..2040428	expressed protein
LOC_Os06g04690	Os.3577.2.S1_at	11/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04690	Os.3577.1.S1_x_at	9/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04699	Os.7474.1.S1_at	11/11	6	+	2049319..2050708	expressed protein
LOC_Os06g04710	Os.3577.2.S1_at	11/11	6	+	2056222..2061224	expressed protein
LOC_Os06g04710	Os.3577.1.S1_x_at	9/11	6	+	2056222..2061224	expressed protein
LOC_Os06g04710	OsAffx.28618.1.S1_at	1/11	6	+	2056222..2061224	expressed protein
LOC_Os06g04722	OsAffx.4722.1.S1_at	11/11	6	+	2061556..2062050	hypothetical protein
LOC_Os06g04734	Os.7474.1.S1_at	4/11	6	+	2063259..2064311	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49667.1.S1_at--1146--523	1	Chr06:2038992..2039016 (25 bp)	GAATGCCATTTAGGTTCCACGGAAC	LOC_Os06g04680
Os.49667.1.S1_at--284--437	1	Chr06:2038976..2039000 (25 bp)	CCACGGAACACGGATTAGCTTGATT	LOC_Os06g04680
Os.49667.1.S1_at--424--155	1	Chr06:2038960..2038984 (25 bp)	AGCTTGATTACATTGGTTGTTCAGA	LOC_Os06g04680
Os.49667.1.S1_at--288--329	1	Chr06:2038910..2038934 (25 bp)	GCAAAAGTGGTACAATTCTTCTACT	LOC_Os06g04680
Os.49667.1.S1_at--512--315	1	Chr06:2038897..2038921 (25 bp)	AATTCTTCTACTTTTGTTATTGTGC	LOC_Os06g04680
Os.49667.1.S1_at--1005--679	1	Chr06:2038882..2038906 (25 bp)	GTTATTGTGCAATAGGTTGCCATTA	LOC_Os06g04680
Os.49667.1.S1_at--259--29	1	Chr06:2038837..2038861 (25 bp)	ATAGTAGGATTTGTTGCTCAACTGG	LOC_Os06g04680
Os.49667.1.S1_at--451--749	1	Chr06:2038812..2038836 (25 bp)	GGGACTGAAAACAGGACTTCCATTC	LOC_Os06g04680
Os.49667.1.S1_at--1023--811	1	Chr06:2038799..2038823 (25 bp)	GGACTTCCATTCCAATGATGTGTTC	LOC_Os06g04680
Os.49667.1.S1_at--224--627	1	Chr06:2038783..2038807 (25 bp)	GATGTGTTCTTTCATATCAGGAAGT	LOC_Os06g04680
Os.49667.1.S1_at--1103--643	1	Chr06:2038738..2038762 (25 bp)	GATCATGGAGCTTTTTATTTGTTAC	NONE

Target Sequence

GAATGCCATTTAGGTTCCACGGAACACGGATTAGCTTGATTACATTGGTTGTTCAGAGATAGTGAAGTGACTTAAAATAA
GTGCAAAAGTGGTACAATTCTTCTACTTTTGTTATTGTGCAATAGGTTGCCATTAGATGGGAAACATATGTTGTAATAGT
AGGATTTGTTGCTCAACTGGGGGACTGAAAACAGGACTTCCATTCCAATGATGTGTTCTTTCATATCAGGAAGTAAAGGA
GAGTAAATGATGATGATCATGGAGCTTTTTATTTGTTAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis