Browse Element(s) Details


Os.49798.1.S1_at

Description gb:AK111638.1
DB_XREF= gi:37988301
TID=Os.49798.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122N06, full insert sequence.
FL= gb:AK111638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0443011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04370NANA2+1928681..1929055hypothetical protein
LOC_Os02g04380NANA2+1930708..1933214hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_x_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04400NANA2+1942710..1942973hypothetical protein
LOC_Os02g04410OsAffx.2503.1.S1_at11/112+1944550..1945719hypothetical protein
LOC_Os02g04420Os.11694.1.S1_x_at11/112+1946073..1949419expressed protein
LOC_Os02g04420Os.11694.2.S1_at11/112+1946073..1949419expressed protein
LOC_Os02g04430Os.49798.1.S1_at11/112+1949825..1953397Leucine Rich Repeat family protein, expressed
LOC_Os02g04440OsAffx.24097.1.S1_x_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440OsAffx.24097.1.S1_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440Os.14475.1.S1_at10/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04450Os.11034.1.S1_at11/112+1967731..1972804uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os02g04460Os.27375.1.A1_at11/112+1972939..197466350S ribosomal protein L3, chloroplast precursor, putative, expressed
LOC_Os02g04470NANA2+1976598..1976924retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49798.1.S1_at--430--9611Chr02:1953017..1953041 (25 bp)
TCATCAGCCGGTGCACGCAGCAGGA
LOC_Os02g04430
Os.49798.1.S1_at--551--9031Chr02:1953028..1953052 (25 bp)
TGCACGCAGCAGGAAGCGGAGTTCC
LOC_Os02g04430
Os.49798.1.S1_at--67--1691Chr02:1953098..1953122 (25 bp)
AGCCTGCACGCGATGCTTGCGGACA
LOC_Os02g04430
Os.49798.1.S1_at--523--9071Chr02:1953111..1953135 (25 bp)
TGCTTGCGGACAGCAGAGCTGCAGC
LOC_Os02g04430
Os.49798.1.S1_at--804--5891Chr02:1953126..1953150 (25 bp)
GAGCTGCAGCAACTGATTAGTGACG
LOC_Os02g04430
Os.49798.1.S1_at--593--7351Chr02:1953145..1953169 (25 bp)
GTGACGAAAATTTACTAATCCCGCA
LOC_Os02g04430
Os.49798.1.S1_at--554--9731Chr02:1953160..1953184 (25 bp)
TAATCCCGCAGTTCCGAAAAAATAT
LOC_Os02g04430
Os.49798.1.S1_at--986--2751Chr02:1953199..1953223 (25 bp)
AAGACATACTCTAATGCCCTATATT
LOC_Os02g04430
Os.49798.1.S1_at--20--4551Chr02:1953214..1953238 (25 bp)
GCCCTATATTTATGCCACTATCTTG
LOC_Os02g04430
Os.49798.1.S1_at--681--6931Chr02:1953271..1953295 (25 bp)
GTAGTAATATTTGTCATCCTCCTGA
LOC_Os02g04430
Os.49798.1.S1_at--3--571Chr02:1953286..1953310 (25 bp)
ATCCTCCTGATTTGCGTGGGTTCGA
LOC_Os02g04430
Target Sequence 
TCATCAGCCGGTGCACGCAGCAGGAAGCGGAGTTCCGGCCGGCCATGTCGCAGGTGGTGCAGGATCTGCGGCGCGCGCTG
CAGCCTGCACGCGATGCTTGCGGACAGCAGAGCTGCAGCAACTGATTAGTGACGAAAATTTACTAATCCCGCAGTTCCGA
AAAAATATATATAACACCATATAAGACATACTCTAATGCCCTATATTTATGCCACTATCTTGTGTTAAATCTATTATATT
TTGGAACGAAGGTTGTAGTAATATTTGTCATCCTCCTGATTTGCGTGGGTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis