Browse Element(s) Details


Os.49808.1.S2_at

Description gb:AK111688.1
DB_XREF= gi:37988351
TID=Os.49808.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170G06, full insert sequence.
FL= gb:AK112037.1 gb:AK111688.1 gb:AK111695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0874011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08700Os.54630.1.S1_at11/113+4461999..4468617expressed protein
LOC_Os03g08710OsAffx.12788.1.S1_at11/113+4469068..4469445expressed protein
LOC_Os03g08720Os.55882.1.S1_at11/113+4471201..4473165Transferase family protein, expressed
LOC_Os03g08730Os.31563.1.S1_at11/113+4475846..4479962uroporphyrinogen-III synthase family protein, putative, expressed
LOC_Os03g08740Os.49808.1.S1_at11/113+4492515..4497652expressed protein
LOC_Os03g08740Os.49808.1.S2_at11/113+4492515..4497652expressed protein
LOC_Os03g08754OsAffx.12789.1.S1_s_at11/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08754Os.22281.1.S1_at8/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08770Os.53841.1.S1_at11/113+4512003..4515703Modifier of rudimentary protein, expressed
LOC_Os03g08790Os.6442.1.S1_at11/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08790Os.51676.1.S1_at1/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08800OsAffx.25021.1.S1_at11/113+4522223..4524205Protein CutA, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49808.1.S2_at--1033--6391Chr03:4497079..4497103 (25 bp)
GATCTGACATTGAGGCAAGGCCACC
LOC_Os03g08740
Os.49808.1.S2_at--481--6071Chr03:4497128..4497152 (25 bp)
GAGTTCTTGGTTGCAAACTGCTAAA
LOC_Os03g08740
Os.49808.1.S2_at--250--2511Chr03:4497179..4497203 (25 bp)
AACATCAGGAAATCCATCGCCGTCG
LOC_Os03g08740
Os.49808.1.S2_at--506--9911Chr03:4497218..4497242 (25 bp)
TACTGCACCAACCAATGCATGGCGC
LOC_Os03g08740
Os.49808.1.S2_at--770--4791Chr03:4497288..4497312 (25 bp)
GCTCCTGGATCCAACCTGATGAAAG
LOC_Os03g08740
Os.49808.1.S2_at--1161--2331Chr03:4497366..4497390 (25 bp)
AAAGACTTCACATATGACATCTGGG
LOC_Os03g08740
Os.49808.1.S2_at--525--1051Chr03:4497430..4497454 (25 bp)
AGGTGGCGCCGCCATGCTACAAGAT
LOC_Os03g08740
Os.49808.1.S2_at--98--1311Chr03:4497451..4497475 (25 bp)
AGATGTTTGCTGCTTCTGAAGGCGC
LOC_Os03g08740
Os.49808.1.S2_at--119--9011Chr03:4497467..4497491 (25 bp)
TGAAGGCGCCTCCAATAGCTTCTTC
LOC_Os03g08740
Os.49808.1.S2_at--844--9991Chr03:4497482..4497506 (25 bp)
TAGCTTCTTCGCGAGGGAGCCCCAG
LOC_Os03g08740
Os.49808.1.S2_at--1057--9171Chr03:4497589..4497613 (25 bp)
TGCCGTCCGATGTAGCATCTGGTTA
LOC_Os03g08740
Target Sequence 
GATCTGACATTGAGGCAAGGCCACCANCTGCTAGGAATAACCATGAGAAGAGTTCTTGGTTGCAAACTGCTAAAGAGCAA
CCTGCTCCACCACCTTCAGTAACATCAGGAAATCCATCGCCGTCGCCATCGCCTTCACCTACTGCACCAACCAATGCATG
GCGCTCGCCATTGTTGTCCTCGCCTTCCCCGATCGCGCCTCGTNCTCGCGCTCCTGGATCCAACCTGATGAAAGATAAGG
CTGTGAAGAGAACCGAGGGCGCCGCGACGACGACAACAACGAGGAAGAAAGACTTCACATATGACATCTGGGGGGACCAT
TTCTCCGGCCATCTGCTGGGGAAGGCAAGGGAGGTGGCGCCGCCATGCTACAAGATGTTTGCTGCTTCTGAAGGCGCCTC
CAATAGCTTCTTCGCGAGGGAGCCCCAGGCCCTGGTGACGAAGCCGCCATCTCCATCTCCATCTTCATCTTCATCTTCTT
CGCCTCCGGTGACCCGCGGTCGCGGGTCGCTGCCGTCCGATGTAGCATCTGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49808.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis