Browse Element(s) Details


Os.49810.1.S1_at

Description gb:AK111704.1
DB_XREF= gi:37988367
TID=Os.49810.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013E24, full insert sequence.
FL= gb:AK111704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4704011/11Anthocyanin regulatory Lc protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47000OsAffx.26495.1.S1_at11/114+27639968..27641782hypothetical protein
LOC_Os04g47000OsAffx.14084.1.S1_x_at1/114+27639968..27641782hypothetical protein
LOC_Os04g47010Os.51863.1.S1_at8/114+27644991..27647491expressed protein
LOC_Os04g47020Os.11569.1.S1_at11/114+27648990..27651276genetic modifier, putative, expressed
LOC_Os04g47030NANA4+27652055..27654368hypothetical protein
LOC_Os04g47040Os.49810.1.S1_at11/114+27662061..27671679Anthocyanin regulatory Lc protein, putative, expressed
LOC_Os04g47059OsAffx.15220.1.S1_s_at11/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059OsAffx.15220.2.S1_s_at11/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059Os.57542.1.S1_at10/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059Os.13877.1.S1_at5/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059Os.27544.1.A1_at4/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g47059OsAffx.10711.1.S1_x_at3/114+27696505..27720731Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009813biological_processflavonoid biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49810.1.S1_at--223--6051Chr04:27662678..27662702 (25 bp)
GAGTTGGAGTCCAGCAGCGAGCCAT
LOC_Os04g47040
Os.49810.1.S1_at--173--2091Chr04:27662652..27662676 (25 bp)
ACATCAGCGCGCAACCGAAACAGGA
LOC_Os04g47040
Os.49810.1.S1_at--839--5891Chr04:27662597..27662621 (25 bp)
GAGCTGGTCTCTGAGATCGGTGTCA
LOC_Os04g47040
Os.49810.1.S1_at--223--3331Chr04:27662523..27662547 (25 bp)
CACGGACAAGGTGGTTCTCCTGGAG
LOC_Os04g47040
Os.49810.1.S1_at--874--2771Chr04:27662447..27662471 (25 bp)
AAGAGCCTCTGTCTTGACGTTCTCT
LOC_Os04g47040
Os.49810.1.S1_at--727--2831Chr04:27662275..27662298 (24 bp)
AAGTTTGCTTGTTCTGGTTCAGTGG
LOC_Os04g47040
Os.49810.1.S1_at--613--5551Chr04:27662222..27662246 (25 bp)
GAAAGCTATCGGTGGCTAGCGTCGA
LOC_Os04g47040
Os.49810.1.S1_at--769--7191Chr04:27662202..27662226 (25 bp)
GTCGAGAGCGGCACACGTACGTTAG
LOC_Os04g47040
Os.49810.1.S1_at--758--5031Chr04:27662143..27662167 (25 bp)
GCAGAACTACAATACGATCCTCGTG
LOC_Os04g47040
Os.49810.1.S1_at--891--10351Chr04:27662110..27662134 (25 bp)
TTTATTATATGCTCGCTGGTCCAGA
LOC_Os04g47040
Os.49810.1.S1_at--481--1271Chr04:27662068..27662092 (25 bp)
AGATAGCTTCAATCACATCCTCATG
LOC_Os04g47040
Target Sequence 
GAGTTGGAGTCCAGCAGCGAGCCATCACATCAGCGCGCAACCGAAACAGGACAGCAAAGGCGCTGTGAGATCACCGGGAA
GGAGCTGGTCTCTGAGATCGGTGTCAGCGGCGGCGGCGATGCAGGGAGAGAACACCACCACGTGAATGTCACCGTCACGG
ACAAGGTGGTTCTCCTGGAGGTGCAGTGCCGATGGAAGGAGTTGGTGATGACACGAGTGTTCGACGCGATCAAGAGCCTC
TGTCTTGACGTTCTCTCCGTGCAGGCGTCGGCACCGGATGGTCTTCTTGGACTGAAGATACAAGCTAAGTTTGCTTGTTC
TGGTTCAGTGGCACCTGGGATGATCAGCGAAGCTCTCCAGAAAGCTATCGGTGGCTAGCGTCGAGAGCGGCACACGTACG
TTAGATGAATTTGAAATGCAAGAAGCAGAAGCAGAAGTGCAGAACTACAATACGATCCTCGTGAAATTTTATTTATTATA
TGCTCGCTGGTCCAGAAAAATATTTGTTTCGGAAGATAGCTTCAATCACATCCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis