Browse Element(s) Details


Os.49821.1.S1_x_at

Description gb:AK111772.1
DB_XREF= gi:37988435
TID=Os.49821.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067P10, full insert sequence.
FL= gb:AK111772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3438011/11leucine-rich repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed
LOC_Os08g34350Os.20018.2.S1_x_at2/118+21423656..21425276expressed protein
LOC_Os08g34360Os.54786.1.S1_at11/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34360OsAffx.19494.1.S1_at1/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34370OsAffx.17326.1.S1_at10/118+21436098..21444531SET domain containing protein
LOC_Os08g34370Os.49478.1.S1_at1/118+21436098..21444531SET domain containing protein
LOC_Os08g34380Os.49821.1.S1_x_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34380Os.49821.2.S1_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34390Os.56875.1.S1_at11/118+21458160..21459197transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g34400Os.53177.1.S1_s_at1/118+21466073..21470054hypothetical protein
LOC_Os08g34410OsAffx.29506.1.S1_x_at11/118+21470969..21471736hypothetical protein
LOC_Os08g34420OsAffx.26000.1.S1_at2/118+21472829..21477232retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49821.1.S1_x_at--319--10451Chr08:21445871..21445895 (25 bp)
TTAGCAGCGACGAGGTGCGGTCCAT
LOC_Os08g34380
Os.49821.1.S1_x_at--190--1111Chr08:21445619..21445643 (25 bp)
AGTGTGTAGTTTCTGTCTGATCAAA
LOC_Os08g34380
Os.49821.1.S1_x_at--1095--6011Chr08:21445594..21445618 (25 bp)
GAGAGGCCCTTTCCCCGAGAAAGAT
LOC_Os08g34380
Os.49821.1.S1_x_at--898--6831Chr08:21445541..21445565 (25 bp)
GTTTCTCTTTTGCTTCTTTTCACAG
LOC_Os08g34380
Os.49821.1.S1_x_at--472--911Chr08:21445518..21445542 (25 bp)
AGGCTTCTTTATCTTTTGCTGCTGC
LOC_Os08g34380
Os.49821.1.S1_x_at--795--9031Chr08:21445443..21445467 (25 bp)
TGCAGCGCTGCAGAAGACCTTTGGT
LOC_Os08g34380
Os.49821.1.S1_x_at--335--2771Chr08:21445430..21445454 (25 bp)
AAGACCTTTGGTTTGCATTCTGGCC
LOC_Os08g34380
Os.49821.1.S1_x_at--187--8471Chr08:21445410..21445434 (25 bp)
TGGCCCTGATCTCGAGCAAACTTTT
LOC_Os08g34380
Os.49821.1.S1_x_at--1110--5011Chr08:21445385..21445409 (25 bp)
GCAGTACACCCCTGTTCATATATGT
LOC_Os08g34380
Os.49821.1.S1_x_at--255--6931Chr08:21445362..21445386 (25 bp)
GTATGGGCTTCTTCTGAATTCTGAA
LOC_Os08g34380
Os.49821.1.S1_x_at--269--5471Chr08:21445340..21445364 (25 bp)
GAACTCCTTATCTGTATCACTGTAT
LOC_Os08g34380
Target Sequence 
TTAGCAGCGACGAGGTGCGGTCCATCGACATGGTAGAGGAGATGGAGCTGTCAGGGCCAAGGTAGCAGCAGAATGCAGCA
GAGCATTCAGAGCACTGAAAAAGAAATTCAGAGAATCAGATATTCAGGGAGAGTACTTCAGGAAAAAAAGAGAAGAAAAA
TATATTACAGAGGGAAGGGATTGGATTTGTTGCTAGCTGGAGTAGTACGAGTAGTTTCAAAGTGATTGAGATGCTTTTTA
GTTTTAGACCACAGTGTGTAGTTTCTGTCTGATCAAAGAGAGGCCCTTTCCCCGAGAAAGATGTAAAGAAAAAGGGGCTC
CTCCTCTCCGGTTTCTCTTTTGCTTCTTTTCACAGGCTTCTTTATCTTTTGCTGCTGCTGCTTTCTTTTCTCTCTTTCTT
TTGTTGATTTGGGGACGGACATGGCACATGCAGCGCTGCAGAAGACCTTTGGTTTGCATTCTGGCCCTGATCTCGAGCAA
ACTTTTGCAGTACACCCCTGTTCATATATGTATGGGCTTCTTCTGAATTCTGAACTCCTTATCTGTATCACTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49821.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis