Browse Element(s) Details


Os.49840.1.S1_at

Description gb:AK111871.1
DB_XREF= gi:37988534
TID=Os.49840.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041F16, full insert sequence.
FL= gb:AK111871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0598011/11Leucine Rich Repeat family protein, expressed
LOC_Os02g059402/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05940Os.49840.1.S1_at2/112+2952434..2955583Leucine Rich Repeat family protein
LOC_Os02g05950Os.24580.2.A1_at9/112+2958769..2962175Leucine Rich Repeat family protein, expressed
LOC_Os02g05960Os.49783.1.S1_at11/112+2965238..2968656Leucine Rich Repeat family protein, expressed
LOC_Os02g05970OsAffx.2516.1.S1_s_at11/112+2971989..2975380Leucine Rich Repeat family protein, expressed
LOC_Os02g05970OsAffx.2516.1.S1_at10/112+2971989..2975380Leucine Rich Repeat family protein, expressed
LOC_Os02g05980Os.49840.1.S1_at11/112+2978853..2982354Leucine Rich Repeat family protein, expressed
LOC_Os02g05990Os.14919.1.S1_at3/112+2988829..2991655hypothetical protein
LOC_Os02g06000NANA2+2992171..2994782transposon protein, putative, Mutator sub-class
LOC_Os02g06010Os.7658.1.S1_x_at11/112+2995584..2999836integral membrane family protein, putative, expressed
LOC_Os02g06010Os.8125.1.S1_x_at1/112+2995584..2999836integral membrane family protein, putative, expressed
LOC_Os02g06030Os.52494.2.S1_at1/112+3005600..3007976Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49840.1.S1_at--765--7912Chr02:2979406..2979430 (25 bp)
GGATTATCACGGTTGATCCTTCCCA
LOC_Os02g05980
Os.49840.1.S1_at--747--8891Chr02:2979329..2979353 (25 bp)
TGAGTACGCCCAGGCATGGGTTGCT
LOC_Os02g05980
Os.49840.1.S1_at--1111--3612Chr02:2979265..2979289 (25 bp)
CTTGAGCTTCTCACTGGGAGGAGGC
LOC_Os02g05980
Os.49840.1.S1_at--229--1231Chr02:2979239..2979263 (25 bp)
AGTTCCGATACTGTCTACCTCAAAG
LOC_Os02g05980
Os.49840.1.S1_at--881--4691Chr02:2979161..2979185 (25 bp)
GCTGGATTTAACATTTCAAGGCACA
LOC_Os02g05980
Os.49840.1.S1_at--480--9831Chr02:2979117..2979141 (25 bp)
TAAAGGTCCTTGAAATTGCTTGCAA
LOC_Os02g05980
Os.49840.1.S1_at--559--2311Chr02:2979085..2979109 (25 bp)
AAAGGTGATCCTTTGCGGAGGCCTA
LOC_Os02g05980
Os.49840.1.S1_at--943--5331Chr02:2979052..2979076 (25 bp)
GAAGTAGTAGCCAGTCTGCACAGTA
LOC_Os02g05980
Os.49840.1.S1_at--1100--8911Chr02:2979020..2979044 (25 bp)
TGACGGCCTGACCTAAAGATACAAT
LOC_Os02g05980
Os.49840.1.S1_at--575--31Chr02:2978926..2978950 (25 bp)
ATTGGTCTTTTAGTTCATTCTGTAC
LOC_Os02g05980
Os.49840.1.S1_at--281--6211Chr02:2978875..2978899 (25 bp)
GAGGCATTGCCGTTCACTATATTAG
LOC_Os02g05980
Target Sequence 
GGATTATCACGGTTGATCCTTCCCAACAAAACTCATGTCACAACTGAGCTAGTTGGCACTCTTGGTTACATCCCACCTGA
GTACGCCCAGGCATGGGTTGCTACATTGAAAGGTGATGTATACAGTTTCGGAGTGGTCCTGCTTGAGCTTCTCACTGGGA
GGAGGCCAGTTCCGATACTGTCTACCTCAAAGGAACTTGTCCCATGGGTACAGGAGATGGTATCAAATGGAAAGCAGATT
GAGGTGCTGGATTTAACATTTCAAGGCACAGGGTGTGAAGAGCAAATGCTAAAGGTCCTTGAAATTGCTTGCAAGTGTGT
CAAAGGTGATCCTTTGCGGAGGCCTACTATGATAGAAGTAGTAGCCAGTCTGCACAGTATAGACCCTGACGGCCTGACCT
AAAGATACAATAATATGACAAATAATCTTGTACTTTCAGTGAACTGAGTTGATCTAGTCTCACTAGTGCTAGTATTTCTG
ATTGGTCTTTTAGTTCATTCTGTACAGCTTATGTCAGACTAATGTCATTTTGAGGCATTGCCGTTCACTATATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis