Browse Element(s) Details


Os.49842.1.S1_at

Description gb:AK111879.1
DB_XREF= gi:37988542
TID=Os.49842.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042H21, full insert sequence.
FL= gb:AK111879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1193011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11890NANA2+6158355..6159760Syntaxin 124, putative
LOC_Os02g11900OsAffx.24198.1.S1_at8/112+6163475..6163957hypothetical protein
LOC_Os02g11910NANA2+6167015..6167929hypothetical protein
LOC_Os02g11920OsAffx.2578.1.S1_at11/112+6172371..6173788hypothetical protein
LOC_Os02g11930Os.49842.1.S1_at11/112+6183755..6187813Leucine Rich Repeat family protein, expressed
LOC_Os02g11940Os.18817.1.S1_at10/112+6188760..6193368sterol glucosyltransferase, putative, expressed
LOC_Os02g11950OsAffx.24201.1.S1_at11/112+6195010..6195441hypothetical protein
LOC_Os02g11960OsAffx.11993.1.S1_at11/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_s_at10/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_at2/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11970Os.10627.1.S1_a_at11/112+6205390..6207340expressed protein
LOC_Os02g11980OsAffx.24926.1.S1_x_at11/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11980OsAffx.24926.2.S1_at2/112+6208684..6212210Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49842.1.S1_at--1052--2651Chr02:6187280..6187304 (25 bp)
AAGCCTTCATGAACTCGTGGAGTCA
LOC_Os02g11930
Os.49842.1.S1_at--880--8031Chr02:6187298..6187322 (25 bp)
GGAGTCAGCATTTCCACACAAACTA
LOC_Os02g11930
Os.49842.1.S1_at--1076--10231Chr02:6187331..6187355 (25 bp)
TTTGGATCCCATTATGCTGCAGAGT
LOC_Os02g11930
Os.49842.1.S1_at--697--10491Chr02:6187414..6187438 (25 bp)
TTAAGCTGGGTCTGTTGTGTTCGTC
LOC_Os02g11930
Os.49842.1.S1_at--401--6631Chr02:6187427..6187451 (25 bp)
GTTGTGTTCGTCCATATCACCAAAA
LOC_Os02g11930
Os.49842.1.S1_at--916--10051Chr02:6187459..6187483 (25 bp)
TAGGAATGTCACAGGTTTCTGCCGA
LOC_Os02g11930
Os.49842.1.S1_at--170--4011Chr02:6187600..6187624 (25 bp)
CGTGCAATCTTGTTCTTTATGAGGA
LOC_Os02g11930
Os.49842.1.S1_at--47--5511Chr02:6187661..6187685 (25 bp)
GAAAAATTCTAGCTCCAACTTTTGT
LOC_Os02g11930
Os.49842.1.S1_at--816--6691Chr02:6187684..6187708 (25 bp)
GTTCCCCACCTAATAGTACCAATAG
LOC_Os02g11930
Os.49842.1.S1_at--531--6971Chr02:6187699..6187723 (25 bp)
GTACCAATAGTTTCAGCTGTAATTT
LOC_Os02g11930
Os.49842.1.S1_at--575--6051Chr02:6187758..6187782 (25 bp)
GAGTTGTAACGAATTCCATTTGGTA
LOC_Os02g11930
Target Sequence 
AAGCCTTCATGAACTCGTGGAGTCAGCATTTCCACACAAACTAGATGAGATTTTGGATCCCATTATGCTGCAGAGTGACC
TAAATGGAGGAAAATATCATACTGAAATAATGCAGAGTTGCATCATACCAATGGTTAAGCTGGGTCTGTTGTGTTCGTCC
ATATCACCAAAAGACCGATTAGGAATGTCACAGGTTTCTGCCGAAATGGGCACAATAAGACAGTCATTTCTTGAGTTACA
ATGAGAACAAGGAGCTAGCTGCGATGGTAAATAGTACTGACAATTGCAGAAATCTTTTTGTTGAAATGATCATAATGGGA
CGTGCAATCTTGTTCTTTATGAGGAAGAAATAAAANCAAAANCAGATAGAGGTGAATGCATGAAAAATTCTAGCTCCAAC
TTTTGTTCCCCACCTAATAGTACCAATAGTTTCAGCTGTAATTTGGATGTTTGTACAACTACTTTTAATACACTTTGAGA
GTTGTAACGAATTCCATTTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis