Browse Element(s) Details


Os.49873.1.S1_at

Description gb:AK073883.1
DB_XREF= gi:32983906
TID=Os.49873.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071H20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071H20, full insert sequence.
FL= gb:AK119204.1 gb:AK060721.1 gb:AK073883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3127011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31230OsAffx.28692.1.S1_at10/117+18485023..18487346hypothetical protein
LOC_Os07g31230OsAffx.23391.1.S1_at2/117+18485023..18487346hypothetical protein
LOC_Os07g31240NANA7+18489093..18493475retrotransposon protein, putative, unclassified
LOC_Os07g31250Os.35935.2.S1_at11/117+18496568..18501005Protein kinase domain containing protein, expressed
LOC_Os07g31260Os.10451.2.S1_at11/117+18501793..18505457expressed protein
LOC_Os07g31270Os.49873.1.S1_at11/117+18508310..18513451expressed protein
LOC_Os07g31280Os.18100.1.S1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31280Os.47708.1.A1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31290OsAffx.16505.2.S1_x_at11/117+18526814..18530103Protein kinase APK1B, chloroplast precursor, putative
LOC_Os07g31300Os.5814.1.S1_at11/117+18530853..18533386ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os07g31310Os.44002.1.S1_at11/117+18536271..18539583expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49873.1.S1_at--616--5131Chr07:18513011..18513035 (25 bp)
GCAACATTTCCTGACCGATGGTAAT
LOC_Os07g31270
Os.49873.1.S1_at--95--9951Chr07:18513056..18513080 (25 bp)
TACGCTGGTCTTGAAGAGTCCCTGT
LOC_Os07g31270
Os.49873.1.S1_at--114--351Chr07:18513102..18513126 (25 bp)
ATAAATCTTCTTTCTCGCTGATGAA
LOC_Os07g31270
Os.49873.1.S1_at--957--3491Chr07:18513169..18513193 (25 bp)
CATGGAATGGTCAAGCTACCCACTT
LOC_Os07g31270
Os.49873.1.S1_at--422--4851Chr07:18513183..18513207 (25 bp)
GCTACCCACTTGTTCTTATTGGTCA
LOC_Os07g31270
Os.49873.1.S1_at--220--2331Chr07:18513224..18513248 (25 bp)
AAAGTTGCTGTACTATTTTCTGGAC
LOC_Os07g31270
Os.49873.1.S1_at--532--4871Chr07:18513257..18513281 (25 bp)
GCTATGCTGTGACTCTTCGGAAATC
LOC_Os07g31270
Os.49873.1.S1_at--543--8151Chr07:18513275..18513299 (25 bp)
GGAAATCTGTATTGGCTAACCCCTT
LOC_Os07g31270
Os.49873.1.S1_at--927--8211Chr07:18513288..18513312 (25 bp)
GGCTAACCCCTTGAAATGTCGAAAT
LOC_Os07g31270
Os.49873.1.S1_at--497--331Chr07:18513311..18513335 (25 bp)
ATAATGCGTCGCTGTAATGAAACCA
LOC_Os07g31270
Os.49873.1.S1_at--109--6991Chr07:18513337..18513361 (25 bp)
GTACCTGATTCCAAGATTAGTGCCT
LOC_Os07g31270
Target Sequence 
GCAACATTTCCTGACCGATGGTAATAGATCAAATTGGAGAGCTATTACGCTGGTCTTGAAGAGTCCCTGTGGAAGATGAT
CTCAGAAAAAAATAAATCTTCTTTCTCGCTGATGAACCCTTCAAAATGATGAATCGACGCAAGAATCTCAGATCTGTACA
TGGAATGGTCAAGCTACCCACTTGTTCTTATTGGTCAATATGAATTCAGAAAAAAAGTTGCTGTACTATTTTCTGGACAG
AACTGGGCTATGCTGTGACTCTTCGGAAATCTGTATTGGCTAACCCCTTGAAATGTCGAAATAATGCGTCGCTGTAATGA
AACCAGGTACCTGATTCCAAGATTAGTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis