Browse Element(s) Details


Os.49896.1.S1_at

Description gb:AK119305.1
DB_XREF= gi:37988928
TID=Os.49896.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-F06, full insert sequence.
FL= gb:AK119305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1714011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os02g403101/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17110OsAffx.17038.1.S1_at10/118+10461135..10466822expressed protein
LOC_Os08g17110Os.47073.1.S1_at1/118+10461135..10466822expressed protein
LOC_Os08g17120NANA8+10471520..10473684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17130Os.6031.1.S1_at1/118+10476686..10483964transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17140Os.49896.1.S1_at11/118+10485298..10487937retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17150OsAffx.29246.1.S1_x_at11/118+10497396..10497930expressed protein
LOC_Os08g17160Os.49534.1.S1_at11/118+10501794..10502892Plastocyanin-like domain containing protein, expressed
LOC_Os08g17160Os.49534.1.S1_x_at11/118+10501794..10502892Plastocyanin-like domain containing protein, expressed
LOC_Os08g17170NANA8+10511084..10516281retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49896.1.S1_at--16--2831Chr08:10485853..10485877 (25 bp)
AAGTATTGCCACTTCATACCCTTGG
LOC_Os08g17140
Os.49896.1.S1_at--432--10871Chr08:10485832..10485856 (25 bp)
TTGGCGCACCCATATTCGGCGGAGT
LOC_Os08g17140
Os.49896.1.S1_at--404--7552Chr02:24396338..24396701 (25 bp)
GTGGCCCAAGCATTCTTCGGCGAGA
LOC_Os02g40310
Os.49896.1.S1_at--998--4511Chr08:10485761..10485785 (25 bp)
GCCGCAGTCTATGGTCTCGGATAGG
LOC_Os08g17140
Os.49896.1.S1_at--993--6571Chr08:10485710..10485734 (25 bp)
GATTGAGCTTATGCGTCTCATCGGC
LOC_Os08g17140
Os.49896.1.S1_at--32--5431Chr08:10485634..10485658 (25 bp)
GAAGCCGTGAACAAGGTCATCGCCA
LOC_Os08g17140
Os.49896.1.S1_at--785--4691Chr08:10485564..10485588 (25 bp)
GCTGGCTTCCATGGGTAGAGTACAT
LOC_Os08g17140
Os.49896.1.S1_at--166--7031Chr08:10485545..10485569 (25 bp)
GTACATCTACGAGACGGCTTTTCAG
LOC_Os08g17140
Os.49896.1.S1_at--421--811Chr08:10485442..10485466 (25 bp)
ATGGGTATGCATGCCTGTAGGCTCT
LOC_Os08g17140
Os.49896.1.S1_at--563--1311Chr08:10485367..10485391 (25 bp)
AGATGTCCAACATGTGGCATCCTCC
LOC_Os08g17140
Os.49896.1.S1_at--799--8271Chr08:10485352..10485376 (25 bp)
GGCATCCTCCTAATTATACGCATAA
LOC_Os08g17140
Target Sequence 
AAGTATTGCCACTTCATACCCTTGGCGCACCCATATTCGGCGGAGTCCGTGGCCCAAGCATTCTTCGGCGAGATCGTCCG
CCTCCACGGAGTGCCGCAGTCTATGGTCTCGGATAGGGACCCCGTGTTCACCTCCCTATTCTGGATTGAGCTTATGCGTC
TCATCGGCGCCAAGCTCCACATGACGTCGGCATTTCATCCCCACTCCGACGGACAGACCGAAGCCGTGAACAAGGTCATC
GCCATGTATCTCCGCTGCCTCACCAGAGATCGTCCCTGCCAGTGGCTACGCTGGCTTCCATGGGTAGAGTACATCTACGA
GACGGCTTTTCAGTCCTCGCTCAAGCAGCGGCAAGGAATGCAACAATGCACTACTCGGTAGATAGGGGAATACAACAGCA
CATGCACCTGCATGGGTATGCATGCCTGTAGGCTCTACAGGCGCACGGCTGTGTGGTGTTGAGTATTCGATATTTGTGAA
ATTATCAGATGTCCAACATGTGGCATCCTCCTAATTATACGCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis