Browse Element(s) Details


OsAffx.17038.1.S1_at

Description tigr:9636.m01722
TID=OsAffx.17038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1711010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17040OsAffx.10473.1.S1_at3/118+10426163..10436185retrotransposon protein, putative, unclassified
LOC_Os08g17040OsAffx.22702.1.S1_at2/118+10426163..10436185retrotransposon protein, putative, unclassified
LOC_Os08g17050OsAffx.17035.1.S1_at11/118+10436583..10437131GRF zinc finger family protein
LOC_Os08g17050OsAffx.17035.1.S1_x_at11/118+10436583..10437131GRF zinc finger family protein
LOC_Os08g17060OsAffx.29244.1.S1_at5/118+10439466..10440476hypothetical protein
LOC_Os08g17070Os.46314.2.S1_x_at2/118+10442012..10445458retrotransposon protein, putative, unclassified
LOC_Os08g17070Os.10731.2.A1_at1/118+10442012..10445458retrotransposon protein, putative, unclassified
LOC_Os08g17080OsAffx.17036.1.S1_at11/118+10447474..10449813pentatricopeptide, putative
LOC_Os08g17090Os.40855.2.S1_x_at3/118+10452245..10455340hypothetical protein
LOC_Os08g17100OsAffx.29245.1.S1_at11/118+10458395..10459938hypothetical protein
LOC_Os08g17100OsAffx.13740.1.S1_at1/118+10458395..10459938hypothetical protein
LOC_Os08g17110OsAffx.17038.1.S1_at10/118+10461135..10466822expressed protein
LOC_Os08g17110Os.47073.1.S1_at1/118+10461135..10466822expressed protein
LOC_Os08g17120NANA8+10471520..10473684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17130Os.6031.1.S1_at1/118+10476686..10483964transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17140Os.49896.1.S1_at11/118+10485298..10487937retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17038.1.S1_at--885--1271Chr08:10465953..10465977 (25 bp)
AGATCGACCTGAGCTCTCGTGGGCA
LOC_Os08g17110
OsAffx.17038.1.S1_at--842--4631Chr08:10465880..10465904 (25 bp)
GCGTTGTACTGCCATCGAAAGTCTT
LOC_Os08g17110
OsAffx.17038.1.S1_at--883--5551Chr08:10465864..10465888 (25 bp)
GAAAGTCTTGGTGTTCGCCTTGTTT
LOC_Os08g17110
OsAffx.17038.1.S1_at--956--2791Chr08:10462248..10462272 (25 bp)
AAGATGTACCACATTTGCCCGGAGT
LOC_Os08g17110
OsAffx.17038.1.S1_at--739--6571Chr08:10462204..10462228 (25 bp)
GATTCTACCCTAAACGAACGTGCTC
LOC_Os08g17110
OsAffx.17038.1.S1_at--1075--5451Chr08:10462189..10462213 (25 bp)
GAACGTGCTCTTATGACTGGCGTAA
LOC_Os08g17110
OsAffx.17038.1.S1_at--663--7051Chr08:10462168..10462192 (25 bp)
GTAACATGTCTCCTTGCACGATGTA
LOC_Os08g17110
OsAffx.17038.1.S1_at--80--2551Chr08:10462144..10462168 (25 bp)
AACTCTCTCAGATACTTTCAGCTCA
LOC_Os08g17110
OsAffx.17038.1.S1_at--79--8931NONE
TGACCAGCCCGATTATGGATTCCAC
NONE
OsAffx.17038.1.S1_at--314--5751Chr08:10461271..10461295 (25 bp)
GACGGAAGTGCGAAGCCCGCTTGAT
LOC_Os08g17110
OsAffx.17038.1.S1_at--562--3591Chr08:10461205..10461229 (25 bp)
CATTACGTTTCGACTGGCTGTTTAC
LOC_Os08g17110
Target Sequence 
AGATCGACCTGAGCTCTCGTGGGCACCCCGTCCGCGACGCCGGCATTAACGATGGCCCCATTCATCTCCTGCGGCGTTGT
ACTGCCATCGAAAGTCTTGGTGTTCGCCTTGTTTCTCCAGATAAGGAATACGTAGTTATCTGGGATGCAGAGGCAGAGGA
ATTGATAGATGAAGAGGAAGAGAAAGAAGAGGTTGATGACATGATGAAAGATGTACCACATTTGCCCGGAGTCACATCTT
TGACAATAAGGGATTCTACCCTAAACGAACGTGCTCTTATGACTGGCGTAACATGTCTCCTTGCACGATGTAACTCTCTC
AGATACTTTCAGCTCAACATGACCAGCCCGATTATGGATTCCACCATTGCTGCTGGTAATCAAGCTAGCATCATCTCGCT
TCCACATCTCACGGAAGTTGAGATAAGTGGCTTCCGAGGACGGAAGTGCGAAGCCCGCTTGATGGAACGGCTGCATGCAA
GCGCCACTGCTCTCAACAAGATCACATTACGTTTCGACTGGCTGTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis