Browse Element(s) Details


OsAffx.17035.1.S1_x_at

Description tigr:9636.m01716
TID=OsAffx.17035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1705011/11GRF zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17010NANA8+10414966..10418242retrotransposon protein, putative, unclassified
LOC_Os08g17020OsAffx.20647.1.S1_at11/118+10419090..10421654hypothetical protein
LOC_Os08g17030OsAffx.8398.1.S1_at9/118+10422405..10425785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17040OsAffx.10473.1.S1_at3/118+10426163..10436185retrotransposon protein, putative, unclassified
LOC_Os08g17040OsAffx.22702.1.S1_at2/118+10426163..10436185retrotransposon protein, putative, unclassified
LOC_Os08g17050OsAffx.17035.1.S1_at11/118+10436583..10437131GRF zinc finger family protein
LOC_Os08g17050OsAffx.17035.1.S1_x_at11/118+10436583..10437131GRF zinc finger family protein
LOC_Os08g17060OsAffx.29244.1.S1_at5/118+10439466..10440476hypothetical protein
LOC_Os08g17070Os.46314.2.S1_x_at2/118+10442012..10445458retrotransposon protein, putative, unclassified
LOC_Os08g17070Os.10731.2.A1_at1/118+10442012..10445458retrotransposon protein, putative, unclassified
LOC_Os08g17080OsAffx.17036.1.S1_at11/118+10447474..10449813pentatricopeptide, putative
LOC_Os08g17090Os.40855.2.S1_x_at3/118+10452245..10455340hypothetical protein
LOC_Os08g17100OsAffx.29245.1.S1_at11/118+10458395..10459938hypothetical protein
LOC_Os08g17100OsAffx.13740.1.S1_at1/118+10458395..10459938hypothetical protein
LOC_Os08g17110OsAffx.17038.1.S1_at10/118+10461135..10466822expressed protein
LOC_Os08g17110Os.47073.1.S1_at1/118+10461135..10466822expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17035.1.S1_x_at--1058--9411Chr08:10437069..10437093 (25 bp)
TCGGGTTCGGCGTGATTCACAGGTC
LOC_Os08g17050
OsAffx.17035.1.S1_x_at--486--3931Chr08:10437068..10437092 (25 bp)
CGGGTTCGGCGTGATTCACAGGTCA
LOC_Os08g17050
OsAffx.17035.1.S1_x_at--774--6052Chr12:10881854..10881878 (25 bp)
GAGTTGCCTCTTGTGAAATGTCCAT
NONE
OsAffx.17035.1.S1_x_at--830--771Chr08:10437024..10437048 (25 bp)
ATGTCCATTCTGCAAGGGCGATTCA
LOC_Os08g17050
OsAffx.17035.1.S1_x_at--501--4111Chr08:10436957..10436981 (25 bp)
CGCAAGTTTTATCGATGCCTCACCG
LOC_Os08g17050
OsAffx.17035.1.S1_x_at--897--3211Chr08:10436955..10436979 (25 bp)
CAAGTTTTATCGATGCCTCACCGGA
LOC_Os08g17050
OsAffx.17035.1.S1_x_at--107--1211Chr08:10436953..10436977 (25 bp)
AGTTTTATCGATGCCTCACCGGACA
LOC_Os08g17050
OsAffx.17035.1.S1_x_at--229--10131Chr08:10436949..10436972 (24 bp)
TATCGATGCCTCACCGGACAATATA
LOC_Os08g17050
OsAffx.17035.1.S1_x_at--236--9171Chr08:10436846..10436966 (25 bp)
TGCCTCACCGGACAATATACAAGTG
LOC_Os08g17050
OsAffx.17035.1.S1_x_at--587--1771Chr08:10436840..10436960 (25 bp)
ACCGGACAATATACAAGTGCACAAT
LOC_Os08g17050
OsAffx.17035.1.S1_x_at--1077--112Chr12:10882067..10882087 (21 bp)
ATATACAAGTGCACAATGTAAGTTT
NONE
Target Sequence 
TCGGGTTCGGCGTGATTCACAGGTCAGTGAGTTGCCTCTTGTGAAATGTCCATTCTGCAAGGGCGATTCAACGGTAGTGG
AGCGGACATGCAAGAAGGAAGAGAATTTCAACCGCAAGTTTTATCGATGCCTCACCGGACAATATACAAGTGCACAATGT
AAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17035.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis