Browse Element(s) Details


OsAffx.29245.1.S1_at

Description tigr:9636.m01721
TID=OsAffx.29245.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1710011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17040OsAffx.10473.1.S1_at3/118+10426163..10436185retrotransposon protein, putative, unclassified
LOC_Os08g17040OsAffx.22702.1.S1_at2/118+10426163..10436185retrotransposon protein, putative, unclassified
LOC_Os08g17050OsAffx.17035.1.S1_at11/118+10436583..10437131GRF zinc finger family protein
LOC_Os08g17050OsAffx.17035.1.S1_x_at11/118+10436583..10437131GRF zinc finger family protein
LOC_Os08g17060OsAffx.29244.1.S1_at5/118+10439466..10440476hypothetical protein
LOC_Os08g17070Os.46314.2.S1_x_at2/118+10442012..10445458retrotransposon protein, putative, unclassified
LOC_Os08g17070Os.10731.2.A1_at1/118+10442012..10445458retrotransposon protein, putative, unclassified
LOC_Os08g17080OsAffx.17036.1.S1_at11/118+10447474..10449813pentatricopeptide, putative
LOC_Os08g17090Os.40855.2.S1_x_at3/118+10452245..10455340hypothetical protein
LOC_Os08g17100OsAffx.29245.1.S1_at11/118+10458395..10459938hypothetical protein
LOC_Os08g17100OsAffx.13740.1.S1_at1/118+10458395..10459938hypothetical protein
LOC_Os08g17110OsAffx.17038.1.S1_at10/118+10461135..10466822expressed protein
LOC_Os08g17110Os.47073.1.S1_at1/118+10461135..10466822expressed protein
LOC_Os08g17120NANA8+10471520..10473684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17130Os.6031.1.S1_at1/118+10476686..10483964transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29245.1.S1_at--477--3411Chr08:10458471..10458495 (25 bp)
CAGACGCCATCGCTGGCTGTAAGAA
LOC_Os08g17100
OsAffx.29245.1.S1_at--616--5811Chr08:10458473..10458497 (25 bp)
GACGCCATCGCTGGCTGTAAGAACA
LOC_Os08g17100
OsAffx.29245.1.S1_at--426--5011Chr08:10458506..10458629 (25 bp)
GCAGGCAGGTGGCTTCGGCAGGATA
LOC_Os08g17100
OsAffx.29245.1.S1_at--585--3471Chr08:10458610..10458634 (25 bp)
CAGGTGGCTTCGGCAGGATACACTG
LOC_Os08g17100
OsAffx.29245.1.S1_at--1035--8531Chr08:10458633..10458657 (25 bp)
TGGAGCTGCTCACGATCCGACCCGA
LOC_Os08g17100
OsAffx.29245.1.S1_at--746--4831Chr08:10458640..10458664 (25 bp)
GCTCACGATCCGACCCGAGATGGAC
LOC_Os08g17100
OsAffx.29245.1.S1_at--388--1851Chr08:10458644..10458668 (25 bp)
ACGATCCGACCCGAGATGGACACGG
LOC_Os08g17100
OsAffx.29245.1.S1_at--431--551Chr08:10458647..10458671 (25 bp)
ATCCGACCCGAGATGGACACGGTGT
LOC_Os08g17100
OsAffx.29245.1.S1_at--648--5811Chr08:10458651..10458675 (25 bp)
GACCCGAGATGGACACGGTGTTGCA
LOC_Os08g17100
OsAffx.29245.1.S1_at--338--7411Chr08:10458668..10458692 (25 bp)
GTGTTGCAGGAAGCGACCCTCAACG
LOC_Os08g17100
OsAffx.29245.1.S1_at--311--6671Chr08:10458670..10458694 (25 bp)
GTTGCAGGAAGCGACCCTCAACGGG
LOC_Os08g17100
Target Sequence 
CAGACGCCATCGCTGGCTGTAAGAACAAGGCAGAAGCAGGAGCAGGCAGGTGGCTTCGGCAGGATACACTGGAGCTGCTC
ACGATCCGACCCGAGATGGACACGGTGTTGCAGGAAGCGACCCTCAACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis