Browse Element(s) Details


OsAffx.17036.1.S1_at

Description tigr:9636.m01719
TID=OsAffx.17036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1708011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17030OsAffx.8398.1.S1_at9/118+10422405..10425785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17040OsAffx.10473.1.S1_at3/118+10426163..10436185retrotransposon protein, putative, unclassified
LOC_Os08g17040OsAffx.22702.1.S1_at2/118+10426163..10436185retrotransposon protein, putative, unclassified
LOC_Os08g17050OsAffx.17035.1.S1_at11/118+10436583..10437131GRF zinc finger family protein
LOC_Os08g17050OsAffx.17035.1.S1_x_at11/118+10436583..10437131GRF zinc finger family protein
LOC_Os08g17060OsAffx.29244.1.S1_at5/118+10439466..10440476hypothetical protein
LOC_Os08g17070Os.46314.2.S1_x_at2/118+10442012..10445458retrotransposon protein, putative, unclassified
LOC_Os08g17070Os.10731.2.A1_at1/118+10442012..10445458retrotransposon protein, putative, unclassified
LOC_Os08g17080OsAffx.17036.1.S1_at11/118+10447474..10449813pentatricopeptide, putative
LOC_Os08g17090Os.40855.2.S1_x_at3/118+10452245..10455340hypothetical protein
LOC_Os08g17100OsAffx.29245.1.S1_at11/118+10458395..10459938hypothetical protein
LOC_Os08g17100OsAffx.13740.1.S1_at1/118+10458395..10459938hypothetical protein
LOC_Os08g17110OsAffx.17038.1.S1_at10/118+10461135..10466822expressed protein
LOC_Os08g17110Os.47073.1.S1_at1/118+10461135..10466822expressed protein
LOC_Os08g17120NANA8+10471520..10473684transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17036.1.S1_at--46--151Chr08:10449253..10449277 (25 bp)
ATTATCGATGAAGGCCTCCAACCAA
LOC_Os08g17080
OsAffx.17036.1.S1_at--608--2131Chr08:10449293..10449317 (25 bp)
ACAGTATGATAGTTCCGCTTTGCGA
LOC_Os08g17080
OsAffx.17036.1.S1_at--320--291Chr08:10449301..10449325 (25 bp)
ATAGTTCCGCTTTGCGAAAGTCGCA
LOC_Os08g17080
OsAffx.17036.1.S1_at--287--5211Chr08:10449371..10449395 (25 bp)
GAATTGTTCCAACCATTTTGACATA
LOC_Os08g17080
OsAffx.17036.1.S1_at--913--5671Chr08:10449390..10449414 (25 bp)
GACATACCATACATTTCTGAGACAA
LOC_Os08g17080
OsAffx.17036.1.S1_at--87--871Chr08:10449461..10449485 (25 bp)
ATGGCTGTGGTCCTAAGAGTGATAC
LOC_Os08g17080
OsAffx.17036.1.S1_at--1041--5431Chr08:10449523..10449547 (25 bp)
GAACCTGGACATGCTTTGAAGCTCT
LOC_Os08g17080
OsAffx.17036.1.S1_at--479--2091Chr08:10449569..10449593 (25 bp)
ACATCAGACCTTCTTATTCACACTA
LOC_Os08g17080
OsAffx.17036.1.S1_at--814--6831Chr08:10449611..10449635 (25 bp)
GTTTGATCAAACACGGATGCATGCA
LOC_Os08g17080
OsAffx.17036.1.S1_at--19--5531Chr08:10449667..10449691 (25 bp)
GAAAATGGCTTTGCTTCTGATCCAA
LOC_Os08g17080
OsAffx.17036.1.S1_at--868--10171Chr08:10449757..10449781 (25 bp)
TATAATATTATTCCACAGCGTGGCA
LOC_Os08g17080
Target Sequence 
ATTATCGATGAAGGCCTCCAACCAAACGTCAAAACTTACAACAGTATGATAGTTCCGCTTTGCGAAAGTCGCAAGCTTGA
TGAAGCACGGATGGTGTTGGAGGACATGATGCTGAAGGGAATTGTTCCAACCATTTTGACATACCATACATTTCTGAGAC
AAGAAAACATTGATGAAACCCTGAAGTTCTTGAAAAAAATGAAGGATGATGGCTGTGGTCCTAAGAGTGATACATTTCTC
ATGCTTATTGATAGATTTTTTCAATTGAATGAACCTGGACATGCTTTGAAGCTCTGGAATGAAATGAAAAGATATGACAT
CAGACCTTCTTATTCACACTATATGTCAGTTGTGCAAGGTTTGATCAAACACGGATGCATGCAAAGAGCTTTAGAGTATT
ATGATGAAATGAAGGAAAATGGCTTTGCTTCTGATCCAAAACTTGAAAAGGAGTTCAGAACCTTTTTGTTGGCCAACAGA
GACCATTGGAGAGGAGCTGGAAAATATAATATTATTCCACAGCGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis