Browse Element(s) Details


Os.4996.1.S1_at

Description gb:AK122071.1
DB_XREF= gi:37991717
TID=Os.4996.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0006C01.15 (P0006C01.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117J08, full insert sequence.
FL= gb:AK122071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g436403/11TOM7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43610Os.36376.1.S1_at11/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43610Os.36376.2.S1_x_at6/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43620OsAffx.23649.2.S1_at10/111+25315123..25319617hypothetical protein
LOC_Os01g43630Os.24505.1.S1_at11/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43630Os.7815.1.S1_at3/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43640Os.4996.1.S1_at3/111+25331219..25331461TOM7, putative
LOC_Os01g43650Os.30512.1.S1_at11/111+25336301..25339081WRKY DNA binding domain containing protein, expressed
LOC_Os01g43660OsAffx.2228.1.S1_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43660OsAffx.2228.1.S1_x_at11/111+25350535..25351752hypothetical protein
LOC_Os01g43670OsAffx.21333.1.S1_s_at11/111+25353635..25354923hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4996.1.S1_at--1062--1651Chr01:25331491..25331515 (25 bp)
AGCCCTAGGGTTTCTGTTCAGCGAC
NONE
Os.4996.1.S1_at--1133--9131Chr01:25331337..25331361 (25 bp)
TGCGGTTCGTCAAGGAGTGGACCAC
LOC_Os01g43640
Os.4996.1.S1_at--920--1451Chr01:25331301..25331325 (25 bp)
AGAAGACCAAGGTGGCGGCGCACTA
LOC_Os01g43640
Os.4996.1.S1_at--523--511Chr01:25331257..25331281 (25 bp)
ATCGTCGTCGGCATGAGATCCGAGC
LOC_Os01g43640
Os.4996.1.S1_at--280--7811Chr01:25331201..25331225 (25 bp)
GGTCTGATCTGACGATCGCCTTCAA
NONE
Os.4996.1.S1_at--488--4451Chr01:25331184..25331208 (25 bp)
GCCTTCAAGCCCTAGATGCGATCGA
NONE
Os.4996.1.S1_at--257--10571Chr01:25331115..25331139 (25 bp)
TTCTTTCTTAGATCGTGCCTTCTGA
NONE
Os.4996.1.S1_at--885--9411Chr01:25331103..25331127 (25 bp)
TCGTGCCTTCTGAGCAGTTGATGCT
NONE
Os.4996.1.S1_at--133--7991Chr01:25331025..25331049 (25 bp)
GGATGCTTCTTTGGATTAAACTCTT
NONE
Os.4996.1.S1_at--1097--2531Chr01:25331007..25331031 (25 bp)
AACTCTTGCTATTATTGTGCGGGTC
NONE
Os.4996.1.S1_at--1011--7291Chr01:25330991..25331015 (25 bp)
GTGCGGGTCATGGATCTGCTATTAA
NONE
Target Sequence 
AGCCCTAGGGTTTCTGTTCAGCGACCCCCCGAATCGAATCAAGAGGGAGGTGCCATGGCGTCGCGGCCGTCGCTGAAGCC
GAAGCCCAAGGTCAAGGGCGCGAGGAAGGGATCCCCGGCGGCCGACGAGGAGCAGTCCACGGCTGCGGCGGCGGTGCGGT
TCGTCAAGGAGTGGACCACGTGGACCATGAAGAAGACCAAGGTGGCGGCGCACTACGGCTTCATCCCGCTCATCATCGTC
GTCGGCATGAGATCCGAGCCGAGGCCCTCCCTCGCCCAGCTCCTCAGCCCGGTCTGATCTGACGATCGCCTTCAAGCCCT
AGATGCGATCGATCTGCCCCCCTTTACTACCGCTTTAGTAGTGACTTTAGTAATAGTTCTTTCTTAGATCGTGCCTTCTG
AGCAGTTGATGCTGCTGTGCGGATTTAGAGGTTTTTGCTATATGAATCTAATAATGTTATATGGGTGGATGCTTCTTTGG
ATTAAACTCTTGCTATTATTGTGCGGGTCATGGATCTGCTATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis