Browse Element(s) Details


Os.49997.1.S1_at

Description gb:AK119543.1
DB_XREF= gi:37989166
TID=Os.49997.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.49997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F03, full insert sequence.
FL= gb:AK060149.1 gb:AK104575.1 gb:AK104485.1 gb:AK109415.2 gb:AK104369.1 gb:AK060134.1 gb:AK104285.1 gb:AK104178.1 gb:AK104258.1 gb:AK104531.1 gb:AK059729.1 gb:AK119543.1 gb:AK104171.1 gb:AK104216.1 gb:AK104940.1 gb:AK103934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1240011/11BURP domain containing protein, expressed
LOC_Os05g126401/11BURP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12360NANA5+7085977..7090113retrotransposon protein, putative, unclassified
LOC_Os05g12370Os.51419.1.S1_at11/115+7092499..7092896expressed protein
LOC_Os05g12380OsAffx.14658.1.S1_at11/115+7103269..7106467expressed protein
LOC_Os05g12390OsAffx.16290.1.S1_at11/115+7110340..7111502hypothetical protein
LOC_Os05g12400Os.49997.1.S1_at11/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12400Os.28427.2.S1_x_at2/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.1.S1_x_at4/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.2.S1_x_at2/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410OsAffx.26865.1.S1_x_at1/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12420OsAffx.14659.1.S1_at10/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.3.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420Os.27455.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12430NANA5+7124862..7125942retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12440OsAffx.4314.1.S1_at11/115+7128977..7129381expressed protein
LOC_Os05g12450OsAffx.26856.1.S1_at11/115+7131761..7133233UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g12460Os.53011.1.S1_at10/115+7137519..7139032expressed protein
LOC_Os05g12460Os.53011.1.S1_x_at10/115+7137519..7139032expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49997.1.S1_at--1133--7451Chr05:7114075..7114099 (25 bp)
GTGTCCACGGAGGTGATCAGCACGT
LOC_Os05g12400
Os.49997.1.S1_at--101--3951Chr05:7114068..7114092 (25 bp)
CGGAGGTGATCAGCACGTTGACGCC
LOC_Os05g12400
Os.49997.1.S1_at--478--3131Chr05:7113740..7113764 (25 bp)
AATTATTTTAGACATGCTCCTTCCT
LOC_Os05g12400
Os.49997.1.S1_at--452--10351Chr05:7113735..7113759 (25 bp)
TTTTAGACATGCTCCTTCCTATATT
LOC_Os05g12400
Os.49997.1.S1_at--433--10171Chr05:7113684..7113708 (25 bp)
TATCATAAATTTACGCGTGTGCGCG
LOC_Os05g12400
Os.49997.1.S1_at--443--5652Chr05:7236395..7236433 (25 bp)
GACATGCCCACACTAACGTGTTTTA
LOC_Os05g12640
Os.49997.1.S1_at--600--4551Chr05:7113645..7113669 (25 bp)
GCCCACACTAACGTGTTTTACTTTG
LOC_Os05g12400
Os.49997.1.S1_at--850--9751Chr05:7113615..7113639 (25 bp)
TAATAAGTCTGCATACCCAGGTCAT
LOC_Os05g12400
Os.49997.1.S1_at--388--7171Chr05:7113609..7113633 (25 bp)
GTCTGCATACCCAGGTCATCTTGTA
LOC_Os05g12400
Os.49997.1.S1_at--77--7831Chr05:7113596..7113620 (25 bp)
GGTCATCTTGTACGGTGCTACTCCC
LOC_Os05g12400
Os.49997.1.S1_at--73--9591Chr05:7113591..7113615 (25 bp)
TCTTGTACGGTGCTACTCCCTCTAT
LOC_Os05g12400
Target Sequence 
GTGTCCACGGAGGTGATCAGCACGTTGACGCCGACGCCGAGGCAGGCGTACAGGGTGGAGGCCGTGAGGCCCGTGGCGGT
GCCCGGCGGCGACATGGTGGCATGCCACGGGATGCCGTACGCGTACGCCGTGTTCGGGTTGCACGGGCTCAAGGGCGCAG
GCGGTGGCCGCGTGCCACGGGGACGTGGACGGGCACGGCGCGGTGGCGGAGGCATACAAGAGGCTCGGCGTGGCGCCCGG
GAGCGTGGCCATCTGCCACTTCCTGCCTCAGGACGACATGATCTGGGTGCGCAACTGAATTAATGAAGCAGCTACCTTGC
GCGCCATCCATGGCTAATTATTTTAGACATGCTCCTTCCTATATTTTGGATCTACCTGCCGGCTATCATGTTATCATAAA
TTTACGCGTGTGCGCGCGACGATCCGACATGCCCACACTAACGTGTTTTACTTTGTTAATTAATAAGTCTGCATACCCAG
GTCATCTTGTACGGTGCTACTCCCTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis