Browse Element(s) Details


Os.50011.1.S1_at

Description gb:AK066985.1
DB_XREF= gi:32977003
TID=Os.50011.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50011 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092E10, full insert sequence.
FL= gb:AK060793.1 gb:AK119624.1 gb:AK066985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5084011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50789OsAffx.16009.1.S1_at9/116+30735061..30737132hypothetical protein
LOC_Os06g50789OsAffx.16010.1.S1_at7/116+30735061..30737132hypothetical protein
LOC_Os06g50800NANA6+30739031..30742267transposon protein, putative, unclassified
LOC_Os06g50809NANA6+30747993..30748679hypothetical protein
LOC_Os06g50818Os.8311.1.S1_a_at3/116+30750239..30751666hypothetical protein
LOC_Os06g50830Os.55915.1.S1_at11/116+30753647..30757414bZIP transcription factor family protein, expressed
LOC_Os06g50840Os.50011.1.S1_at11/116+30761492..30767203zinc finger family protein, putative, expressed
LOC_Os06g50850OsAffx.16013.1.S1_at11/116+30767269..30769458expressed protein
LOC_Os06g50860Os.9925.1.S1_at10/116+30769704..30772815expressed protein
LOC_Os06g50870Os.53776.1.S1_at10/116+30773203..30775617DNL zinc finger family protein, expressed
LOC_Os06g50880Os.18869.1.S1_at11/116+30775910..30778654transducin family protein, putative, expressed
LOC_Os06g50890Os.10989.2.S1_at11/116+30778798..30783597RNA recognition motif family protein, expressed
LOC_Os06g50890Os.10989.1.S1_a_at11/116+30778798..30783597RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50011.1.S1_at--926--8231Chr06:30766174..30766198 (25 bp)
GGCAAATCGGCCTATTGTTCACAGC
LOC_Os06g50840
Os.50011.1.S1_at--728--6751Chr06:30766190..30766214 (25 bp)
GTTCACAGCCATGAGGATCTTGCCA
LOC_Os06g50840
Os.50011.1.S1_at--109--1471Chr06:30766473..30766579 (25 bp)
AGAAGTCATCTTCAGCCTCGTCAAG
LOC_Os06g50840
Os.50011.1.S1_at--280--7351Chr06:30766732..30766756 (25 bp)
GTGCAAGTCCCAACATCTGGTTCAG
LOC_Os06g50840
Os.50011.1.S1_at--565--10291Chr06:30766788..30766812 (25 bp)
TTTCCTCGTCAGTGCTCGATGAATT
LOC_Os06g50840
Os.50011.1.S1_at--434--5011Chr06:30766823..30766847 (25 bp)
GCAGGCTCTACATTGATCCACAAAG
LOC_Os06g50840
Os.50011.1.S1_at--663--3211Chr06:30766867..30766891 (25 bp)
CAAGGTTGCTGCTTCGGTCATTCAT
LOC_Os06g50840
Os.50011.1.S1_at--622--9291Chr06:30766905..30766929 (25 bp)
TCCGTTGCTCCTCTGTATATGATGA
LOC_Os06g50840
Os.50011.1.S1_at--907--731Chr06:30767004..30767028 (25 bp)
ATGTTTGACGTTTAGCCTGTTCTTG
LOC_Os06g50840
Os.50011.1.S1_at--857--7171Chr06:30767028..30767052 (25 bp)
GTCTGAACTTTTCCTTGTGTACATT
LOC_Os06g50840
Os.50011.1.S1_at--206--7871Chr06:30767101..30767125 (25 bp)
GGTATACTGCATTTTGATCCATCGA
LOC_Os06g50840
Target Sequence 
GGCAAATCGGCCTATTGTTCACAGCCATGAGGATCTTGCCAAAAAACTTAAGGATGCAATGGATATAAATAAGAAGTCAT
CTTCAGCCTCGTCAAGGTCTACGGATGGTTCTAGCAGGCGAATGAGGGAGGTTGCATGCCCCACCTGCACAGTCCACCTT
CAGGTGCAAGTCCCAACATCTGGTTCAGAGACCATAGAATGTGGTGTCTGCCAGCAACCTTTCCTCGTCAGTGCTCGATG
AATTCCATCATCACGCAGGCTCTACATTGATCCACAAAGAAAAAGATTCTGTTGCTGTCAAGGTTGCTGCTTCGGTCATT
CATTGTCTTGATGGGGTCCGTTGCTCCTCTGTATATGATGATGATCTAATTTAGTACAATCATATTCAGAAGTAAGGAAG
AGGCGAATAAAGAAGAGTGTTAGTGTTTGTTTACCATGTTTGACGTTTAGCCTGTTCTTGTCTGAACTTTTCCTTGTGTA
CATTGCGGATATATTGCTTCGAGTTCCATGTGACATGGTGTAATTTACTGCTGGTATACTGCATTTTGATCCATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis