Browse Element(s) Details


Os.50081.1.S1_x_at

Description gb:AK119834.1
DB_XREF= gi:37989457
TID=Os.50081.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-178-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-178-A09, full insert sequence.
FL= gb:AK119834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4478011/11expressed protein
LOC_Os09g300601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44730OsAffx.17514.1.S1_at11/118+27978031..27978466hypothetical protein
LOC_Os08g44740OsAffx.17515.1.S1_at11/118+27979966..27980923hypothetical protein
LOC_Os08g44750Os.5091.1.S1_at11/118+27985889..27988746nodulin MtN21 family protein, putative, expressed
LOC_Os08g44760Os.52402.1.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44760Os.52402.2.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44770Os.5522.1.S1_at10/118+27999601..28002662Superoxide dismutase, chloroplast precursor, putative, expressed
LOC_Os08g44780Os.50081.1.S1_x_at11/118+28002729..28004421expressed protein
LOC_Os08g44790Os.53024.1.S1_at11/118+28004706..28005867Alpha-expansin 3 precursor, putative, expressed
LOC_Os08g44800OsAffx.6139.1.S1_at11/118+28006054..28007512hypothetical protein
LOC_Os08g44810Os.11588.1.S1_at11/118+28008211..28012039Malate dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g44820Os.9354.2.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44820Os.9354.1.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44830Os.51657.1.S1_at11/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44830OsAffx.13726.1.S1_x_at3/118+28022378..28026486zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50081.1.S1_x_at--1043--8392Chr08:28003868..28003892 (25 bp)
GGCGCGGTCTTTGGCGCACAAAGAT
LOC_Os08g44780
Os.50081.1.S1_x_at--232--3691Chr08:28003876..28003900 (25 bp)
CTTTGGCGCACAAAGATTGGCCGGC
LOC_Os08g44780
Os.50081.1.S1_x_at--702--4111Chr08:28003882..28003906 (25 bp)
CGCACAAAGATTGGCCGGCAAGGGA
LOC_Os08g44780
Os.50081.1.S1_x_at--82--6151Chr08:28003947..28003971 (25 bp)
GAGGTGGAGCATTAGTGCGTTAGCC
LOC_Os08g44780
Os.50081.1.S1_x_at--1151--1473Chr09:2273206..2273226 (21 bp)
AGCAGCAGGTGAAAACCTAGTCCGG
NONE
Os.50081.1.S1_x_at--478--2671Chr08:28004102..28004126 (25 bp)
AAGCCCATTCTTGGCTCTTTTGAGC
LOC_Os08g44780
Os.50081.1.S1_x_at--425--9471Chr08:28004207..28004231 (25 bp)
TCTGTGTCCTTTTGTTGGTTTAAGT
LOC_Os08g44780
Os.50081.1.S1_x_at--256--8711Chr08:28004211..28004235 (25 bp)
TGTCCTTTTGTTGGTTTAAGTGGCG
LOC_Os08g44780
Os.50081.1.S1_x_at--160--11Chr08:28004219..28004243 (25 bp)
TGTTGGTTTAAGTGGCGGTCGGTCA
LOC_Os08g44780
Os.50081.1.S1_x_at--1020--7216Chr11:14365624..14365647 (24 bp)
GTCCGGTGTTAGTCTTCTCCTGGGT
NONE
Os.50081.1.S1_x_at--649--7211Chr08:28004300..28004324 (25 bp)
GTCGATGTGTGGATGATGGTATTTT
LOC_Os08g44780
Target Sequence 
GGCGCGGTCTTTGGCGCACAAAGATTGGCCGGCAAGGGACGCCGGTGCAGGGGTCCCACATGTCGGCAGAGCTTGTGTGG
AGGTGGAGCATTAGTGCGTTAGCCGTGGATTTGCAGGTGGTGAGCAGCAGGTGAAAACCTAGTCCGGCCTTGGTCGGACC
GACAACGATGGTTCATTCCCCCTCCTGAGGGCGTTGTCGTGCTGTATCACCCCTCAAGGGTGATTGCCGGGCGAAAGCCC
ATTCTTGGCTCTTTTGAGCCCCGACGGACGGCGGTGGCGGTTTTTCGTCGCTTCTCTTCTTGAAGACGTCGTTTTGGCAT
CCCCTAGGGGGCGATCTCGTCTGTGTCCTTTTGTTGGTTTAAGTGGCGGTCGGTCACGCTTAGCGGCGGCCGGTCCGGTG
TTAGTCTTCTCCTGGGTTTGTGTGTTGGCGATGTCGATGTGTGGATGATGGTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50081.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis