Browse Element(s) Details


Os.50132.1.S1_at

Description gb:AK119925.1
DB_XREF= gi:37989548
TID=Os.50132.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-G12, full insert sequence.
FL= gb:AK119925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2440011/11CRSP complex subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24380OsAffx.17127.1.S1_at11/118+14581809..14588483NB-ARC domain containing protein, expressed
LOC_Os08g24390Os.33708.1.S1_s_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.56276.1.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.33708.2.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24400Os.50132.1.S1_at11/118+14605752..14609430CRSP complex subunit 2, putative, expressed
LOC_Os08g24410Os.45957.4.S1_x_at6/118+14613329..14618665retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24420Os.8780.1.S1_at11/118+14619766..14626792expressed protein
LOC_Os08g24420Os.8780.1.S2_at11/118+14619766..14626792expressed protein
LOC_Os08g24434Os.54383.1.S1_at11/118+14627447..14633423expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008284biological_processpositive regulation of cell proliferation
GO:0045941biological_processpositive regulation of transcription
GO:0000119cellular_componentmediator complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50132.1.S1_at--83--4931Chr08:14608865..14608889 (25 bp)
GCTTGATTCAAGTGGGTCTAGGATA
LOC_Os08g24400
Os.50132.1.S1_at--995--7471Chr08:14608876..14608900 (25 bp)
GTGGGTCTAGGATACCTGGTCTGAA
LOC_Os08g24400
Os.50132.1.S1_at--698--2231Chr08:14608927..14608951 (25 bp)
ACAATGCTTCAGCTGAATCAGATTC
LOC_Os08g24400
Os.50132.1.S1_at--1122--2311Chr08:14608994..14609018 (25 bp)
AAAGTGTCAGCACAGCTCTTTCGTA
LOC_Os08g24400
Os.50132.1.S1_at--628--1571Chr08:14609007..14609031 (25 bp)
AGCTCTTTCGTATTGGATCCATTTA
LOC_Os08g24400
Os.50132.1.S1_at--166--5411Chr08:14609040..14609064 (25 bp)
GAAGCTGATCTTTCTATTGATCTGA
LOC_Os08g24400
Os.50132.1.S1_at--1032--5191Chr08:14609107..14609131 (25 bp)
GCAATAGGCACACACGTCTTCTGGA
LOC_Os08g24400
Os.50132.1.S1_at--869--8231Chr08:14609113..14609137 (25 bp)
GGCACACACGTCTTCTGGAAATTCA
LOC_Os08g24400
Os.50132.1.S1_at--1080--751Chr08:14609163..14609187 (25 bp)
ATGTCACAATCATCCACTGAGGTTA
LOC_Os08g24400
Os.50132.1.S1_at--1154--571Chr08:14609174..14609198 (25 bp)
ATCCACTGAGGTTATCCTGAAGCGA
LOC_Os08g24400
Os.50132.1.S1_at--893--6511Chr08:14609280..14609304 (25 bp)
GATATTTGATGCACTGACTATATTC
LOC_Os08g24400
Target Sequence 
GCTTGATTCAAGTGGGTCTAGGATACCTGGTCTGAAAATTAATTACTGGCTAGAGGAAAAAAACAATGCTTCAGCTGAAT
CAGATTCATCTCCATATATTAAAATTGAGGCAGGGCAAGATATGCAGATAAAGTGTCAGCACAGCTCTTTCGTATTGGAT
CCATTTACAGATAAAGAAGCTGATCTTTCTATTGATCTGAGTTGCATTGATGTTGAAGCTCTAATTTTGAAAGCAANTGC
TTGCAATAGGCACACACGTCTTCTGGAAATTCAAAGGGAATTGATGAAAAATGTTCAGATGTCACAATCATCCACTGAGG
TTATCCTGAAGCGAGAAGTTCATGGAGAGGGCTTTCAGAANGTACCTTGTGGGCTGNTCTAATTAANGGTATTACTGCAG
CCACCTTGNGNTTTTGATATTTGATGCACTGACTATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis