Browse Element(s) Details


Os.50155.1.S1_at

Description gb:AK119955.1
DB_XREF= gi:37989578
TID=Os.50155.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-C09, full insert sequence.
FL= gb:AK119955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1296011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12910OsAffx.15399.1.S1_at11/116+7066118..7068523XPA-binding protein 2, putative
LOC_Os06g12920NANA6+7071754..7072192hypothetical protein
LOC_Os06g12930NANA6+7075783..7077025hypothetical protein
LOC_Os06g12940OsAffx.27615.1.S1_at11/116+7078678..7081436hypothetical protein
LOC_Os06g12940OsAffx.11516.1.S1_x_at1/116+7078678..7081436hypothetical protein
LOC_Os06g12950OsAffx.15400.1.S1_at11/116+7084091..7087529expressed protein
LOC_Os06g12960Os.50155.1.S1_at11/116+7092926..7095195expressed protein
LOC_Os06g12970NANA6+7096595..7101079retrotransposon protein, putative, unclassified
LOC_Os06g12980OsAffx.27595.1.S1_at10/116+7101965..7105822Cyclin, N-terminal domain containing protein
LOC_Os06g12990OsAffx.27596.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g12990Os.13757.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g13000OsAffx.27597.1.S1_at11/116+7120121..7122027Ankyrin repeat protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005874cellular_componentmicrotubule
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50155.1.S1_at--926--7231Chr06:7093512..7093536 (25 bp)
GTCGCCGCCGGAGTTAGGATCAATT
LOC_Os06g12960
Os.50155.1.S1_at--803--5851Chr06:7093548..7093572 (25 bp)
GACCACACGCAGCTCGATGAGAATC
LOC_Os06g12960
Os.50155.1.S1_at--169--391Chr06:7094590..7094612 (23 bp)
ATCAGCATGACAGAGACGGCCAACG
LOC_Os06g12960
Os.50155.1.S1_at--55--8391Chr06:7094622..7094646 (25 bp)
GGCGACACATTCTAGGCATCGTCAA
LOC_Os06g12960
Os.50155.1.S1_at--926--1972Chr06:7094658..7094682 (25 bp)
ACTGCACAGCATCGCCGAAGTCAGA
LOC_Os06g12960
Os.50155.1.S1_at--104--5631Chr06:7094687..7094711 (25 bp)
GACACGATCGTCAGTGGCCGGCCAG
LOC_Os06g12960
Os.50155.1.S1_at--160--8471Chr06:7094701..7094725 (25 bp)
TGGCCGGCCAGTTGAACTGATCTGT
LOC_Os06g12960
Os.50155.1.S1_at--547--10031Chr06:7094731..7094755 (25 bp)
TAGAGTTCATGCTCATCATTTCATC
LOC_Os06g12960
Os.50155.1.S1_at--185--10851Chr06:7094798..7094822 (25 bp)
TTGGGTTCAGCATCTCTCAACAGAG
LOC_Os06g12960
Os.50155.1.S1_at--681--5591Chr06:7094893..7094917 (25 bp)
GAAATCACCAATCTTACTCAGGCCA
LOC_Os06g12960
Os.50155.1.S1_at--349--7031Chr06:7095064..7095088 (25 bp)
GTACATCCTTTGCAGATAGCTTTTT
LOC_Os06g12960
Target Sequence 
GTCGCCGCCGGAGTTAGGATCAATTCCGGCGGCGACGACCACACGCAGCTCGATGAGAATCTTGATCAGCATGACAGAGA
CGGCCAACGGAGCAGCTCGGCGACACATTCTAGGCATCGTCAATGGCGCCCATCACTGCACAGCATCGCCGAAGTCAGAA
GCTGACACGATCGTCAGTGGCCGGCCAGTTGAACTGATCTGTGTTTTTAGAGTTCATGCTCATCATTTCATCAGAAGTGC
ATTTTCAGCTGATGCGATGTTCAGTTTGGTTGTGTTGGGTTCAGCATCTCTCAACAGAGAAGAAGATGATCAGTAGCTCT
GAATGCATCATATTCAGAGTTTCAGTTAGTAGGTACCAAGTCACTGTAAGAAATCACCAATCTTACTCAGGCCATTTTAC
TGAGGTCAAGATTGTTTCTGGCTTGGGAAGTAAGTTGGTACCTTAATTTGCATTGCATCTTAGAGTTGGCACATACAGAG
GGGTATTTATTAATCAAAAGCAGGGTGATGTACTATTATATATTCAGTTTAAGATGCAAAGTACATCCTTTGCAGATAGC
TTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis