Browse Element(s) Details


Os.50196.2.S1_x_at

Description gb:AK120031.1
DB_XREF= gi:37989654
TID=Os.50196.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-D08, full insert sequence.
FL= gb:AK120031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g387203/11Cytochrome oxidase assembly protein, expressed
LOC_Os02g502201/11expressed protein
LOC_Os03g557041/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38700Os.33471.1.A1_at11/118+24331599..24335037BTB/POZ domain containing protein, expressed
LOC_Os08g38710Os.29825.1.S1_a_at11/118+24342303..24346656Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os08g38720Os.50196.1.S1_x_at11/118+24349539..24353200Cytochrome oxidase assembly protein, expressed
LOC_Os08g38720Os.50196.2.S1_x_at3/118+24349539..24353200Cytochrome oxidase assembly protein, expressed
LOC_Os08g38730NANA8+24359580..24360044expressed protein
LOC_Os08g38740OsAffx.6076.1.S1_at11/118+24362472..24366048Glycosyltransferase QUASIMODO1, putative
LOC_Os08g38750NANA8+24367675..24368124hypothetical protein
LOC_Os08g38760Os.57126.1.S1_at11/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.17410.1.S1_x_at10/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.2482.1.S1_at1/118+24371107..24382118expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50196.2.S1_x_at--220--3991Chr08:24351895..24351919 (25 bp)
CGTGGTAGGCATTACTGCCATATCT
LOC_Os08g38720
Os.50196.2.S1_x_at--391--4951Chr08:24351903..24351927 (25 bp)
GCATTACTGCCATATCTGGAGCATT
LOC_Os08g38720
Os.50196.2.S1_x_at--371--3911Chr08:24351918..24351938 (21 bp)
CTGGAGCATTTGTTGCGGGCACACT
LOC_Os08g38720
Os.50196.2.S1_x_at--1031--3771Chr02:22857629..22857653 (25 bp)
CTCGAGTTCCTTCGCGGGATCGACG
NONE
Os.50196.2.S1_x_at--603--9371Chr02:22857669..22857693 (25 bp)
TCGAGCTCCTGCACGCGGGATATAC
NONE
Os.50196.2.S1_x_at--272--9271Chr02:22857675..22857699 (25 bp)
TCCTGCACGCGGGATATACGAGCCA
NONE
Os.50196.2.S1_x_at--443--3971Chr02:22857684..22857708 (25 bp)
CGGGATATACGAGCCACCGCTGCGT
NONE
Os.50196.2.S1_x_at--156--371Chr02:22857851..22857875 (25 bp)
ATAATAGAGTGGTGACTGGACTGCC
NONE
Os.50196.2.S1_x_at--901--86114Chr11:14913405..14913426 (22 bp)
TGGTGACTGGACTGCCACGCGTACG
NONE
Os.50196.2.S1_x_at--330--6231Chr02:22857958..22857982 (25 bp)
GATGTTCGGTTTTATGGTTTAGAGG
NONE
Os.50196.2.S1_x_at--919--10491Chr02:22857988..22858012 (25 bp)
TTCGGACGACCATAATAGTTCGAGG
NONE
Target Sequence 
CGTGGTAGGCATTACTGCCATATCTGGAGCATTTGTTGCGGGCACACTGGCGCGGGGTGACGGCGACAGACGGCGCGCGA
GCGGGGCTCGAGGCGACGGCGACGACGGACGACGGCGCGCGGCGCAGGCGGGGCTCGAGGGGAGATGGCGACGGCGCGCG
GCGCGAGTGATGGCGATGGCGACCGCCCCTCCTCGAGTTCCTTCGCGGGATCGACGAGCCGCCGAGCAAGCTCGAGCTCC
TGCACGCGGGATATACGAGCCACCGCTGCGTCCTCCCCGCGCTCCGCCACCGCCCGCACACCGCCGCCACCACGTCCTCC
CCCACCGCCGCCGACCCGTTTGAGAGAGAGAGGAAGAGTGAGAGAGAGAAGAGAGAATGAGGAGATGACAGGTGGGTCCC
ACATTTTTTTTTTATAATAGAGTGGTGACTGGACTGCCACGCGTACGCTACGTAGACCAAAACCACCGTAGATTGGGTCG
AGGAGGGTAATTCATCCGGTTTGCATAGTTGGGGGTAAAGGATGTTCGGTTTTATGGTTTAGAGGGGTAATTCGGACGAC
CATAATAGTTCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50196.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis