Browse Element(s) Details


Os.50199.1.S1_at

Description gb:AK120060.1
DB_XREF= gi:37989683
TID=Os.50199.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001G01, full insert sequence.
FL= gb:AK120060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0430011/11fringe protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04270Os.18661.1.S1_at11/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04270OsAffx.16132.1.S1_at1/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04280Os.52196.1.S1_at11/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04280OsAffx.17544.1.S1_at1/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04290OsAffx.16823.1.S1_at10/118+2089543..2094035Polycomb group protein FIE2, putative
LOC_Os08g04300Os.50199.1.S1_at11/118+2101974..2105683fringe protein, putative, expressed
LOC_Os08g04310Os.14191.1.S1_at11/118+2109339..2110694Plastocyanin-like domain containing protein, expressed
LOC_Os08g04320OsAffx.25936.1.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.7.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.2.S1_x_at4/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.5.S1_x_at1/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04330NANA8+2115691..2118666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04340Os.23207.1.S1_at11/118+2123269..2124255Plastocyanin-like domain containing protein, expressed
LOC_Os08g04350NANA8+2127337..2127962Plastocyanin-like domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50199.1.S1_at--94--10811Chr08:2105084..2105108 (25 bp)
TTGGGTCCCACCAGGTCTGACATAA
LOC_Os08g04300
Os.50199.1.S1_at--1028--7171Chr08:2105098..2105122 (25 bp)
GTCTGACATAACTTTTCTCGTAGCA
LOC_Os08g04300
Os.50199.1.S1_at--332--9391Chr08:2105134..2105158 (25 bp)
TCGTATGATCTTTGCAGTAATTCCA
LOC_Os08g04300
Os.50199.1.S1_at--970--9731Chr08:2105151..2105175 (25 bp)
TAATTCCATTGTACTAGCTTCCTAG
LOC_Os08g04300
Os.50199.1.S1_at--383--671Chr08:2105228..2105252 (25 bp)
ATGAAGTCTCACATTCTGCCGTTTA
LOC_Os08g04300
Os.50199.1.S1_at--251--3811Chr08:2105243..2105267 (25 bp)
CTGCCGTTTACTTTGGTCAACTGGA
LOC_Os08g04300
Os.50199.1.S1_at--645--7791Chr08:2105257..2105281 (25 bp)
GGTCAACTGGAATCTCCTTTACAAA
LOC_Os08g04300
Os.50199.1.S1_at--1064--1091Chr08:2105284..2105308 (25 bp)
AGTGGAGGCACCATAATCTGTTTGT
LOC_Os08g04300
Os.50199.1.S1_at--334--271Chr08:2105345..2105369 (25 bp)
ATAGTGGACTTGAGTGCGGCCCTCC
LOC_Os08g04300
Os.50199.1.S1_at--555--8411Chr08:2105362..2105386 (25 bp)
GGCCCTCCTTTTGGTGATCAAGACG
LOC_Os08g04300
Os.50199.1.S1_at--781--6451Chr08:2105377..2105401 (25 bp)
GATCAAGACGACTTCTGGTGACAGT
LOC_Os08g04300
Target Sequence 
TTGGGTCCCACCAGGTCTGACATAACTTTTCTCGTAGCAATTTATAATTTTCGTATGATCTTTGCAGTAATTCCATTGTA
CTAGCTTCCTAGTACAGAAAGTGACAAGACAAGTTAAGCAGACTAGCATTGTAATAGATTCTCCATGAAGTCTCACATTC
TGCCGTTTACTTTGGTCAACTGGAATCTCCTTTACAAAGGAGTGGAGGCACCATAATCTGTTTGTGCTATACAATGACCT
TTTTAGCTTGAAGAAAAATGCATAGTGGACTTGAGTGCGGCCCTCCTTTTGGTGATCAAGACGACTTCTGGTGACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis