Browse Element(s) Details


Os.50205.2.S1_at

Description gb:AK120094.1
DB_XREF= gi:37989717
TID=Os.50205.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021N17, full insert sequence.
FL= gb:AK120094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3157010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31550OsAffx.14901.1.S1_at11/115+18273181..18276849NB-ARC domain containing protein
LOC_Os05g31560NANA5+18281364..18281823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31570Os.50205.2.S1_at10/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31570Os.50205.1.S1_x_at5/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31580OsAffx.14902.1.S1_at11/115+18304654..18305241hypothetical protein
LOC_Os05g31590OsAffx.27107.1.S1_at10/115+18309141..18310349hypothetical protein
LOC_Os05g31600Os.54849.1.S1_at11/115+18310739..18314902retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g31610OsAffx.14903.1.S1_at11/115+18315706..18320034Leucine Rich Repeat family protein, expressed
LOC_Os05g31620Os.10058.1.S1_at10/115+18325341..18326315EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50205.2.S1_at--1003--3131Chr05:18300929..18300953 (25 bp)
AATTCCCTCTTTCTTGTCGGAGTTG
LOC_Os05g31570
Os.50205.2.S1_at--587--10191Chr05:18300959..18300983 (25 bp)
TATATTTCTACATCTGACCCAAAGG
LOC_Os05g31570
Os.50205.2.S1_at--203--3111NONE
AATAGGTGGTCCATACTTCTTTCCA
NONE
Os.50205.2.S1_at--836--8431Chr05:18301325..18301349 (25 bp)
GGCCATGACCGAATAGCCACAATGA
LOC_Os05g31570
Os.50205.2.S1_at--868--1391Chr05:18301400..18301424 (25 bp)
AGACGTTGATGTTGCGGTCGTTCTT
LOC_Os05g31570
Os.50205.2.S1_at--403--5311Chr05:18301443..18301467 (25 bp)
GAAGGAGCACAACGCGCACGTATTT
LOC_Os05g31570
Os.50205.2.S1_at--1066--2811Chr05:18301472..18301496 (25 bp)
AATGTTTCATATCCACCGGTACAAG
LOC_Os05g31570
Os.50205.2.S1_at--613--2491Chr05:18301539..18301563 (25 bp)
AACAGACTTGTTTTCGTAGCTCGAT
LOC_Os05g31570
Os.50205.2.S1_at--370--9391Chr05:18301559..18301583 (25 bp)
TCGATCGACGGCTTTTGTCTTAGTT
LOC_Os05g31570
Os.50205.2.S1_at--89--731Chr05:18301588..18301612 (25 bp)
ATGTTGTAGCCGTTTGTTGTTGTGT
LOC_Os05g31570
Os.50205.2.S1_at--549--591Chr05:18301616..18301640 (25 bp)
ATGCCAGTTGGCTTTATCAGGGTCA
LOC_Os05g31570
Target Sequence 
AATTCCCTCTTTCTTGTCGGAGTTGCCAAATATATTTCTACATCTGACCCAAAGGATATGGGGTTCTGTGTAACATCTGA
TAAACAATAGGTGGTCCATACTTCTTTCCACCAAGTGAACCAAACAAAGATCTGGAGACCTGGAGTTCTGAAGACTTACC
ATGAATCTTTCGCTGGGGACCTGGAGCTGGTGCCGTGCAAGCCCGAGGTCGTGAGGGGGCTACGCTATGGTTCGCTGCTT
CTCGCTGGCCATGACCGAATAGCCACAATGATGTGTGTTTGAATGGTGGCCGGTGATGAGGAAGAACTATGGGAAGCAAA
AAGACGTTGATGTTGCGGTCGTTCTTGTTTGTTGGTAAGATTTAGAAGGAGCACAACGCGCACGTATTTCAAAAATGTTT
CATATCCACCGGTACAAGTTCTTAACGCTATTTGGAAGGAATTCTTATTTCTTGGAAAATAACAGACTTGTTTTCGTAGC
TCGATCGACGGCTTTTGTCTTAGTTGTAAATGTTGTAGCCGTTTGTTGTTGTGTGTAATGCCAGTTGGCTTTATCAGGGT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50205.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis