Browse Element(s) Details


Os.50217.1.S1_at

Description gb:AK120156.1
DB_XREF= gi:37989779
TID=Os.50217.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030B09, full insert sequence.
FL= gb:AK120156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0148011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01439OsAffx.13610.1.S1_at8/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01439Os.7307.3.S1_x_at2/114+290661..300956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01460OsAffx.3694.1.S1_at11/114+305560..306283hypothetical protein
LOC_Os04g01470Os.23187.1.S1_at8/114+307102..309702O-methyltransferase family protein, expressed
LOC_Os04g01480Os.50217.1.S1_at11/114+312797..319537zinc finger family protein, putative, expressed
LOC_Os04g01490Os.7825.1.S1_at11/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01490Os.57170.1.S1_at1/114+324341..327600Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01500Os.5883.1.S1_at11/114+337148..338134expressed protein
LOC_Os04g01500Os.37016.2.S1_x_at1/114+337148..338134expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008173molecular_functionRNA methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50217.1.S1_at--643--2231Chr04:317825..317849 (25 bp)
ACAATGATGTGACTGCAGCTACTGC
LOC_Os04g01480
Os.50217.1.S1_at--610--51Chr04:317866..317890 (25 bp)
ATTGTTGCTATTGTGGATCCTCCTC
LOC_Os04g01480
Os.50217.1.S1_at--76--8651Chr04:317895..318375 (25 bp)
TGGGCTTCACCCTACTGTGATCAAG
LOC_Os04g01480
Os.50217.1.S1_at--157--5771Chr04:318713..319032 (25 bp)
GACGTCTAGTGTACATTTCCTGCAA
LOC_Os04g01480
Os.50217.1.S1_at--620--4351Chr04:319034..319058 (25 bp)
CCAGATAGTCTAGTTGCCAATGCGA
LOC_Os04g01480
Os.50217.1.S1_at--69--3031Chr04:319052..319076 (25 bp)
AATGCGATTGAGCTGTGTACCCCAT
LOC_Os04g01480
Os.50217.1.S1_at--977--7031Chr04:319152..319176 (25 bp)
GTACAAAGTCGATGCCCAACTCTGA
LOC_Os04g01480
Os.50217.1.S1_at--163--2551Chr04:319169..319193 (25 bp)
AACTCTGAGCCATTTGTTCCCAAGA
LOC_Os04g01480
Os.50217.1.S1_at--256--8811Chr04:319183..319207 (25 bp)
TGTTCCCAAGAGAGCCATGGCTGTT
LOC_Os04g01480
Os.50217.1.S1_at--783--2811Chr04:319264..319288 (25 bp)
AAGTAGCCGGCTCATCGAATTCTTT
LOC_Os04g01480
Os.50217.1.S1_at--1--6331Chr04:319332..319356 (25 bp)
GATGCATTACAAGACCCAGAAGCCA
LOC_Os04g01480
Target Sequence 
ACAATGATGTGACTGCAGCTACTGCATGTCAGTTCGAAGACATTGTTGCTATTGTGGATCCTCCTCGTGTTGGGCTTCAC
CCTACTGTGATCAAGGCATTNAGGACTCATCCACGAATTCGACGTCTAGTGTACATTTCCTGCAATCCAGATAGTCTAGT
TGCCAATGCGATTGAGCTGTGTACCCCATCATCTGAGAAACAGGAAAAGAACAAAGGAAACCGGGGATGGCGAACCATGA
GCAGCGCTGGCCTCGCGAGGCAGCGTACAAAGTCGATGCCCAACTCTGAGCCATTTGTTCCCAAGAGAGCCATGGCTGTT
GATTTGTTCCCCCACACCTCGCATTGTGAGATGGTTATGCTTTTCGAGAGGTGAACAAGTAGCCGGCTCATCGAATTCTT
TCTAGAGATTTTTGATCTTTGTTGAAATTTTCATCATGTTGTATGATGCATTACAAGACCCAGAAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis