Browse Element(s) Details


Os.50299.1.S1_at

Description gb:AK120602.1
DB_XREF= gi:37990225
TID=Os.50299.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149K24, full insert sequence.
FL= gb:AK120602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2707011/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os06g039801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27030Os.12726.1.S1_at11/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27030Os.20514.1.S1_x_at1/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27040OsAffx.12218.1.S1_at11/112+15893855..15895179hypothetical protein
LOC_Os02g27050OsAffx.7362.1.S1_x_at1/112+15896400..15898346transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27060Os.11765.1.S1_at11/112+15904840..15909709HMG box family protein, expressed
LOC_Os02g27070Os.50299.1.S1_at11/112+15910212..15914036Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g27080OsAffx.24443.1.S1_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27080OsAffx.24443.1.S1_x_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27090NANA2+15915593..15916777transposon protein, putative, Mutator sub-class
LOC_Os02g27100OsAffx.24445.2.S1_at2/112+15920310..15922044hypothetical protein
LOC_Os02g27100Os.53712.1.S1_x_at1/112+15920310..15922044hypothetical protein
LOC_Os02g27110Os.25005.1.A1_at11/112+15925428..15944630expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50299.1.S1_at--471--3451Chr02:15911494..15911518 (25 bp)
CAGTGCATAGTTCAGCCGTAGGACA
LOC_Os02g27070
Os.50299.1.S1_at--168--2331Chr02:15911470..15911494 (25 bp)
AAAGACCAAGCATATTTTAGCCCAT
LOC_Os02g27070
Os.50299.1.S1_at--326--10251Chr02:15911448..15911469 (22 bp)
TTTGGGCTGAGACACATGCCATACT
LOC_Os02g27070
Os.50299.1.S1_at--662--592Chr06:1616915..1616956 (24 bp)
ATGCCATACTTGCAGTTCCTTGGTT
LOC_Os06g03980
Os.50299.1.S1_at--513--8071Chr02:15910508..15910532 (25 bp)
GGAGCACTCAGTATCAATCTCAACT
LOC_Os02g27070
Os.50299.1.S1_at--769--3051Chr02:15910493..15910517 (25 bp)
AATCTCAACTTTCACTTGGTAGCAG
LOC_Os02g27070
Os.50299.1.S1_at--933--6951Chr02:15910475..15910499 (25 bp)
GTAGCAGTTCATTAACCAGCCGGTA
LOC_Os02g27070
Os.50299.1.S1_at--750--1271Chr02:15910447..15910471 (25 bp)
AGATCAAGGTGTGCCAACGACCTCA
LOC_Os02g27070
Os.50299.1.S1_at--442--9751Chr02:15910404..15910428 (25 bp)
TAAGAGCCTGTTCGGTTAATCCTGA
LOC_Os02g27070
Os.50299.1.S1_at--419--3971Chr02:15910392..15910416 (25 bp)
CGGTTAATCCTGATGTGGCCTTCAA
LOC_Os02g27070
Os.50299.1.S1_at--15--9671Chr02:15910351..15910375 (25 bp)
TCAAGAAACTCGAACCCTGGTAAAT
LOC_Os02g27070
Target Sequence 
CAGTGCATAGTTCAGCCGTAGGACAAAGACCAAGCATATTTTAGCCCATTTTGGGCTGAGACACATGCCATACTTGCAGT
TCCTTGGTTTGTTGCTTGACAAGAATACCTTAATATGAGTGCAACATGCAAGATCTTAGGTTTTGTCAATCTGTCAGAAC
TTCAAATGTTCAAGTCTTCAATGAATGTTATCAACTTCTCATTACAAGTTTGGAGAAAAATCCAGAGATTTTTTGTGTAT
GAACTTGTCATGGTCATGGGTATGACAATGGAGCACTCAGTATCAATCTCAACTTTCACTTGGTAGCAGTTCATTAACCA
GCCGGTAGTAAGATCAAGGTGTGCCAACGACCTCATCAGTTAATGAGAAACAATAAGAGCCTGTTCGGTTAATCCTGATG
TGGCCTTCAAATTCCCCCGATCCACATCAAGAAACTCGAACCCTGGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis