Browse Element(s) Details

Os.50302.1.S1_at

Description

gb:AK120621.1
DB_XREF= gi:37990244
TID=Os.50302.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152E17, full insert sequence.
FL= gb:AK072084.1 gb:AK120621.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g12540	11/11	pentatricopeptide, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g12470	Os.33878.1.S1_at	6/11	6	+	6763464..6771922	expressed protein
LOC_Os06g12470	OsAffx.21953.1.S1_at	2/11	6	+	6763464..6771922	expressed protein
LOC_Os06g12480	Os.43764.1.A1_at	11/11	6	+	6777675..6780081	hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480	OsAffx.24046.7.S1_x_at	3/11	6	+	6777675..6780081	hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480	OsAffx.24046.2.S1_x_at	3/11	6	+	6777675..6780081	hAT family dimerisation domain containing protein, expressed
LOC_Os06g12480	OsAffx.24046.3.S1_x_at	1/11	6	+	6777675..6780081	hAT family dimerisation domain containing protein, expressed
LOC_Os06g12490	OsAffx.27584.1.S1_at	11/11	6	+	6781327..6782881	hypothetical protein
LOC_Os06g12500	OsAffx.15391.1.S1_at	11/11	6	+	6788041..6788851	plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g12510	OsAffx.4812.1.S1_at	11/11	6	+	6789517..6791070	pentatricopeptide, putative
LOC_Os06g12520	OsAffx.4813.1.S1_at	11/11	6	+	6792121..6792388	hypothetical protein
LOC_Os06g12530	Os.14007.1.S1_at	11/11	6	+	6793152..6795998	Nuclear migration protein nudC, putative, expressed
LOC_Os06g12540	Os.50302.1.S1_at	11/11	6	+	6795507..6797469	pentatricopeptide, putative, expressed
LOC_Os06g12550	OsAffx.4814.1.S1_at	11/11	6	+	6800972..6801358	hypothetical protein
LOC_Os06g12560	OsAffx.28216.1.S1_at	11/11	6	+	6807877..6810728	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12560	Os.46458.2.S1_at	2/11	6	+	6807877..6810728	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12570	OsAffx.4815.1.S1_at	11/11	6	+	6813709..6814191	hypothetical protein
LOC_Os06g12580	Os.49196.1.S1_at	11/11	6	+	6815407..6818817	expressed protein
LOC_Os06g12580	Os.10184.1.S1_s_at	11/11	6	+	6815407..6818817	expressed protein
LOC_Os06g12590	Os.14975.1.S2_at	11/11	6	+	6821983..6831863	Protein kinase domain containing protein, expressed
LOC_Os06g12590	Os.14975.1.S1_at	11/11	6	+	6821983..6831863	Protein kinase domain containing protein, expressed
LOC_Os06g12590	Os.12612.1.S1_at	1/11	6	+	6821983..6831863	Protein kinase domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50302.1.S1_at--929--599	1	Chr06:6795767..6795791 (25 bp)	GAGACGCTGCGAATCACCAAGAACT	LOC_Os06g12540
Os.50302.1.S1_at--862--361	1	Chr06:6795744..6795768 (25 bp)	CTTGAGAGTTTGTAGGGATTGCCAC	LOC_Os06g12540
Os.50302.1.S1_at--1011--691	1	Chr06:6795733..6795757 (25 bp)	GTAGGGATTGCCACGAGGCGACCAA	LOC_Os06g12540
Os.50302.1.S1_at--979--333	1	Chr06:6795722..6795746 (25 bp)	CACGAGGCGACCAAGTACGTGTCTC	LOC_Os06g12540
Os.50302.1.S1_at--995--677	1	Chr06:6795674..6795698 (25 bp)	GTTAGGGACAGGAGCCGGTTCCATC	LOC_Os06g12540
Os.50302.1.S1_at--995--347	1	Chr06:6795666..6795690 (25 bp)	CAGGAGCCGGTTCCATCATTTCAAG	LOC_Os06g12540
Os.50302.1.S1_at--743--321	1	Chr06:6795645..6795669 (25 bp)	CAAGGATGGCATGTGTTCGTGTAAA	LOC_Os06g12540
Os.50302.1.S1_at--556--11	1	Chr06:6795581..6795605 (25 bp)	ATTCTTTACAAGCAATCGATTCACA	LOC_Os06g12540
Os.50302.1.S1_at--58--939	1	Chr06:6795566..6795590 (25 bp)	TCGATTCACAAATAGAGGTCACTGG	LOC_Os06g12540
Os.50302.1.S1_at--820--1031	1	Chr06:6795529..6795553 (25 bp)	TTTACTATCCATTCAAAGGTTCAGG	LOC_Os06g12540
Os.50302.1.S1_at--1066--787	1	Chr06:6795512..6795536 (25 bp)	GGTTCAGGAAACAGCACGGATTCAC	LOC_Os06g12540

Target Sequence

GAGACGCTGCGAATCACCAAGAACTTGAGAGTTTGTAGGGATTGCCACGAGGCGACCAAGTACGTGTCTCGCGTGTTTGG
GCGTGAGATCGTGGTTAGGGACAGGAGCCGGTTCCATCATTTCAAGGATGGCATGTGTTCGTGTAAAGATTACTGGTAAG
AAAAATAGACGTGATGATGCAGAGAAATTCTTTACAAGCAATCGATTCACAAATAGAGGTCACTGGGGTGCAACTGATTT
TACTATCCATTCAAAGGTTCAGGAAACAGCACGGATTCAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis