Browse Element(s) Details


Os.50309.1.S1_at

Description gb:AK120650.1
DB_XREF= gi:37990273
TID=Os.50309.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156M02, full insert sequence.
FL= gb:AK120650.1 gb:AK108739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3439011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g476601/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34350NANA6+19991736..19992110hypothetical protein
LOC_Os06g34360OsAffx.5001.1.S1_at7/116+19999030..19999818Zinc finger, C3HC4 type family protein
LOC_Os06g34370NANA6+20005381..20006739transposon protein, putative, Pong sub-class
LOC_Os06g34380OsAffx.11235.1.S1_at1/116+20007349..20008578transposon protein, putative, Pong sub-class
LOC_Os06g34390Os.50309.1.S1_at11/116+20009531..20011039Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34400OsAffx.15738.1.S1_at10/116+20018208..20020124Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34410OsAffx.15737.1.S1_at11/116+20024004..20024330hypothetical protein
LOC_Os06g34420OsAffx.15736.1.S1_at11/116+20024975..20030158DEAD/DEAH box helicase family protein
LOC_Os06g34430Os.56371.1.S1_at10/116+20032289..20033346Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34440Os.14566.1.S1_at11/116+20033669..20041687DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50309.1.S1_at--61--7211Chr06:20010469..20010493 (25 bp)
GTCGTCACCGGTTCAAGCGGCGATC
LOC_Os06g34390
Os.50309.1.S1_at--146--2691Chr06:20010483..20010507 (25 bp)
AAGCGGCGATCATCAACTACGTGCA
LOC_Os06g34390
Os.50309.1.S1_at--811--6432Chr06:20010490..20010514 (25 bp)
GATCATCAACTACGTGCAGGCCTCA
LOC_Os06g34390
Os.50309.1.S1_at--1126--5731Chr06:20010529..20010553 (25 bp)
GACGGCGTACCACAGCCTGAACGAG
LOC_Os06g34390
Os.50309.1.S1_at--900--3351Chr06:20010618..20010642 (25 bp)
CACCGATAGGTGGTCTGAGTCTGCA
LOC_Os06g34390
Os.50309.1.S1_at--233--7231Chr06:20010784..20010808 (25 bp)
GTCGCCGGTGCCACATTAATAACGA
LOC_Os06g34390
Os.50309.1.S1_at--900--2931Chr06:20010832..20010856 (25 bp)
AAGGCTATAGCTTGACAGGCAATTT
LOC_Os06g34390
Os.50309.1.S1_at--682--7431Chr06:20010882..20010906 (25 bp)
GTGTATGTCTCTTGTATAGCTTGTG
LOC_Os06g34390
Os.50309.1.S1_at--115--10831Chr06:20010902..20010926 (25 bp)
TTGTGGGCTTAGATTTGCTCCTTGA
LOC_Os06g34390
Os.50309.1.S1_at--172--9111Chr06:20010917..20010941 (25 bp)
TGCTCCTTGATCACATTGTCTTGAC
LOC_Os06g34390
Os.50309.1.S1_at--1160--5571Chr06:20010971..20010995 (25 bp)
GAAATGACAAAGTCCTGCCAAGCAG
LOC_Os06g34390
Target Sequence 
GTCGTCACCGGTTCAAGCGGCGATCATCAACTACGTGCAGGCCTCACGTTCGCCGTCTCCGACGGCGTACCACAGCCTGA
ACGAGCGGTGGCCGAGCTCGCCGACGCCGGTTGTGGTTGTGCGGTCGAAGTCGCCGTCGCCGTCGTCGCCACCGATAGGT
GGTCTGAGTCTGCAGACGACGACGGCGGCGGCGGCGAGAGGCGTCGGCGTGGTGGAAGGGGTGGATGCAGGTGCAACCAC
GTCGGCGTCGGCGTCGGCGCCAACGCAGGTGGTGGCGCTGTCAAGGGAAGGTGGTGGTTCGCGGTCCAAGTCGCCGTCGC
CGGTGCCACATTAATAACGAGGCTGCAGAAGAGACGCCAGGATAAGGCTATAGCTTGACAGGCAATTTGATTCTTTCTTC
CTTTTTTTTTTTTTTGTGTATGTCTCTTGTATAGCTTGTGGGCTTAGATTTGCTCCTTGATCACATTGTCTTGACACGAA
GAATGTGTGTATTTTGATAGAACGGAAATGACAAAGTCCTGCCAAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis