Browse Element(s) Details


Os.50315.2.A1_at

Description gb:AK120679.1
DB_XREF= gi:37990302
TID=Os.50315.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162J03, full insert sequence.
FL= gb:AK120679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g166401/11expressed protein
LOC_Os05g079801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16600OsAffx.22947.2.S1_x_at8/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.1.S1_x_at7/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.3.S1_x_at5/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16600OsAffx.22947.5.S1_x_at1/115+9388858..9393435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16610NANA5+9396669..9397868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16620Os.56292.1.S1_x_at1/115+9399028..9403076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16630Os.10825.1.S1_at8/115+9411679..9415435UPF0071 protein, putative, expressed
LOC_Os05g16640OsAffx.26779.2.S1_at11/115+9418028..9422983expressed protein
LOC_Os05g16640Os.51733.1.S1_x_at11/115+9418028..9422983expressed protein
LOC_Os05g16640OsAffx.26779.1.S1_x_at2/115+9418028..9422983expressed protein
LOC_Os05g16640Os.50315.2.A1_at1/115+9418028..9422983expressed protein
LOC_Os05g16660Os.48078.1.S1_at11/115+9428102..9433771Eukaryotic translation initiation factor 3 subunit 2, putative, expressed
LOC_Os05g16670Os.26806.1.S1_at8/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16670Os.2550.1.S1_at1/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16670OsAffx.29133.1.S1_x_at1/115+9444846..9453161SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50315.2.A1_at--313--971Chr03:96328..96352 (25 bp)
AGGAGCTCGCTGTCAAAGCGGCAGT
NONE
Os.50315.2.A1_at--557--2351Chr03:96342..96366 (25 bp)
AAAGCGGCAGTAGTTGCTCACCTTC
NONE
Os.50315.2.A1_at--34--10531Chr03:96379..96403 (25 bp)
TTCATCTGATGGTACACGTCCGGGA
NONE
Os.50315.2.A1_at--916--9831Chr03:96391..96415 (25 bp)
TACACGTCCGGGAAGAACTTCTTCA
NONE
Os.50315.2.A1_at--824--10531Chr03:96412..96436 (25 bp)
TTCAGGAACGGCTCCATCGACGTTA
NONE
Os.50315.2.A1_at--1118--6991Chr03:96512..96536 (25 bp)
GTACTGGTATTATTAGCTGCTGCCA
NONE
Os.50315.2.A1_at--228--1611Chr03:96526..96550 (25 bp)
AGCTGCTGCCATGCATCAATTGCTG
NONE
Os.50315.2.A1_at--1041--191Chr03:96609..96633 (25 bp)
ATTTCGCATGCATCGAATCTGTTAA
NONE
Os.50315.2.A1_at--618--1191Chr03:96688..96712 (25 bp)
AGTAGTAGTATCTCTCTTGTCTGGA
NONE
Os.50315.2.A1_at--923--6293Chr05:9420931..9421082 (25 bp)
GATGATGCATGTGCACTTGTGCAGT
LOC_Os05g16640
Os.50315.2.A1_at--819--7511Chr03:96879..96903 (25 bp)
GTGGATGCATCAGTATACACTACTC
NONE
Target Sequence 
AGGAGCTCGCTGTCAAAGCGGCAGTAGTTGCTCACCTTCTTCTTGTCCCCCTTCATCTGATGGTACACGTCCGGGAAGAA
CTTCTTCAGGAACGGCTCCATCGACGTTACCCCACCTTATTAATTGGTTTTTTCCCCAATAATAACACAACACAACAAAT
TAATTAATGTTCCTTTTTGTTTAAGTACTGGTATTATTAGCTGCTGCCATGCATCAATTGCTGCTATTAATTGGTTACCT
AGGCAAATTAATGGAGCAGTATTACAAAAGGTGAATTATTAATTTCGCATGCATCGAATCTGTTAATCATTATGAATCAA
CTAACTATGCACTAGTATGTGAGAGAATGCAGGTTGATCAAGTAGTAGTATCTCTCTTGTCTGGAGTCAGTGAAGAAGAA
GAGGCAGATGATGCATGTGCACTTGTGCAGTGCAGCGTGCACTGGAGTAGTATGTTGGCTATGAATGGTTATCTTAAATA
GCCAGATGGATTGATGGTTGTCGGTTGCTTCCATCAAATTATACTATTAATCTCTGAAGAATTAATTAATTGTGGATGCA
TCAGTATACACTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50315.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis