Browse Element(s) Details


Os.50328.2.S1_x_at

Description gb:AK070681.1
DB_XREF= gi:32980705
TID=Os.50328.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063E02, full insert sequence.
FL= gb:AK070681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2817011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28120Os.50584.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.14919.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.56216.1.S1_at2/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120OsAffx.29313.1.S1_at1/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28129OsAffx.27053.1.S1_at11/115+16376790..16378007hypothetical protein
LOC_Os05g28140OsAffx.27054.1.S1_at11/115+16383253..16383921hypothetical protein
LOC_Os05g28150NANA5+16388498..16388778hypothetical protein
LOC_Os05g28170Os.50328.1.S1_at11/115+16389895..16394689expressed protein
LOC_Os05g28170Os.50328.2.S1_x_at11/115+16389895..16394689expressed protein
LOC_Os05g28180Os.9020.1.S1_at11/115+16399487..16407399AMP deaminase, putative, expressed
LOC_Os05g28180OsAffx.14859.1.S1_x_at10/115+16399487..16407399AMP deaminase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50328.2.S1_x_at--736--10071Chr05:16391583..16391607 (25 bp)
TAGGGTGCCGTCTGCGTATTGTAAC
LOC_Os05g28170
Os.50328.2.S1_x_at--26--6871Chr05:16391568..16391592 (25 bp)
GTATTGTAACGTTGGTGGTGCCCCG
LOC_Os05g28170
Os.50328.2.S1_x_at--374--9791Chr05:16391523..16391547 (25 bp)
TAAGACCCCTGTGTTGTAGGCTTGC
LOC_Os05g28170
Os.50328.2.S1_x_at--532--6931Chr05:16391508..16391532 (25 bp)
GTAGGCTTGCTGAATCATCTTTTGA
LOC_Os05g28170
Os.50328.2.S1_x_at--244--291Chr05:16391449..16391473 (25 bp)
ATAGAGGGTCTCCTTGTCGAACTCA
LOC_Os05g28170
Os.50328.2.S1_x_at--616--6291Chr05:16391388..16391412 (25 bp)
GATGATAATCTGAGCCTTGCCTGAA
LOC_Os05g28170
Os.50328.2.S1_x_at--278--2351Chr05:16391297..16391321 (25 bp)
AAAGCATCCCAGCTGACAGTGTCAA
LOC_Os05g28170
Os.50328.2.S1_x_at--408--171Chr05:16391187..16391211 (25 bp)
ATTTTCCGTGATTGATCTGCCTTTA
LOC_Os05g28170
Os.50328.2.S1_x_at--873--7691Chr05:16391144..16391168 (25 bp)
GGGTCAATCAGCTTTGGTATTTCCT
LOC_Os05g28170
Os.50328.2.S1_x_at--255--211Chr05:16391126..16391150 (25 bp)
ATTTCCTTCTGCAACCTGATTGTGA
LOC_Os05g28170
Os.50328.2.S1_x_at--1069--1971Chr05:16391036..16391060 (25 bp)
ACTGCTGTTGCTATCTTCGGTAAGA
LOC_Os05g28170
Target Sequence 
TAGGGTGCCGTCTGCGTATTGTAACGTTGGTGGTGCCCCGTCGATATCTAGAGGGTGTTTTAAGACCCCTGTGTTGTAGG
CTTGCTGAATCATCTTTTGAAGCACATCGGCAACCAGAATGAAAAGATAGGGTGATAGAGGGTCTCCTTGTCGAACTCAT
CTTTTGTATTATATATGTTCTCCTTTTTGTCCATTGATGATAATCTGAGCCTTGCCTGAACATAAGAGTGTCTTGGTCCA
ACCAATCCATTTCTCCGGGAAACCTCTCGTTTCAAGAACTCTAAACAAAGCATCCCAGCTGACAGTGTCAAAAGCCTTGT
AAAAGTCCAATTTGAGAACTAACATTGGTTTTTTGTTCTTTAGGGCTGATTGTACTAGCTCTGAGGCGAAGATTAGATTT
TCCGTGATTGATCTGCCTTTAATGAAGCCTGACTGCATAGGGTCAATCAGCTTTGGTATTTCCTTCTGCAACCTGATTGT
GATAGTTTTGCTGATAAGTTTTGGTACACTGTGCAATAGTGAAATAGGTCTGAAGTCTTTAATCTGAACTGCTGTTGCTA
TCTTCGGTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50328.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis