Browse Element(s) Details


Os.50339.1.S1_at

Description gb:AK120781.1
DB_XREF= gi:37990404
TID=Os.50339.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010B15, full insert sequence.
FL= gb:AK120781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3995011/11Pollen-specific protein C13 precursor, putative, expressed
LOC_Os06g434901/11Cytochrome P450 family protein
LOC_Os06g489701/113-phosphoinositide-dependent protein kinase-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39910Os.38157.1.S1_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.38157.1.S1_s_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.15747.1.A1_at10/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39920Os.55181.1.S1_at11/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39920OsAffx.19468.2.S1_at1/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39930Os.12654.1.S1_at11/119+22902539..22904349Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os09g39940Os.21629.1.S1_at11/119+22907376..22908312Plastocyanin-like domain containing protein, expressed
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed
LOC_Os09g39970Os.53580.1.S1_at11/119+22916723..22925111Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os09g39980Os.18292.1.S1_at4/119+22924985..22928249ubiquitin family protein, putative, expressed
LOC_Os09g40000Os.5443.1.S1_x_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.5443.1.S1_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49143.1.S1_at10/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49645.1.S1_at10/119+22933510..22938704expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0003824molecular_functioncatalytic activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50339.1.S1_at--1105--3991Chr09:22908614..22908638 (25 bp)
CGTGACCCGGATTTCTTCGTGGAGG
LOC_Os09g39950
Os.50339.1.S1_at--805--7511Chr09:22908632..22908656 (25 bp)
GTGGAGGGCGACGTGTACTGCGACA
LOC_Os09g39950
Os.50339.1.S1_at--1029--9111Chr09:22908711..22908735 (25 bp)
TGCGGCTGGAGTGCCGGCACTTCAT
LOC_Os09g39950
Os.50339.1.S1_at--616--1131Chr09:22908720..22908744 (25 bp)
AGTGCCGGCACTTCATGAGCGCGAG
LOC_Os09g39950
Os.50339.1.S1_at--162--3551Chr09:22908799..22908823 (25 bp)
CATCGAGCTGGTGGACAACCGCGGC
LOC_Os09g39950
Os.50339.1.S1_at--342--1811Chr09:22908864..22908888 (25 bp)
ACCCCGAATGCCACGAGACGGAGGT
LOC_Os09g39950
Os.50339.1.S1_at--350--3552Chr09:22908991..22909015 (25 bp)
CATCTGCGGTGACCTTCTCAAGAGC
LOC_Os09g39950
Os.50339.1.S1_at--594--3731Chr09:22909053..22909077 (25 bp)
CTACACTGCTCCCTTTATTATTATT
LOC_Os09g39950
Os.50339.1.S1_at--820--10354Chr09:22909066..22909090 (25 bp)
TTTATTATTATTTCCTCTTCTTGCT
LOC_Os09g39950
Os.50339.1.S1_at--272--102116Chr12:6707166..6707188 (22 bp)
TATTATACTGAAAAAATACCCGTGC
NONE
Os.50339.1.S1_at--46--311Chr09:22909116..22909140 (25 bp)
ATACCCGTGCATTATAATGGGTGAA
LOC_Os09g39950
Target Sequence 
CGTGACCCGGATTTCTTCGTGGAGGGCGACGTGTACTGCGACACGTGCCGCGCGGGGTTCCAGACGAACGCGACGACGGC
GATCCAGGGCGCGCGGGTGCGGCTGGAGTGCCGGCACTTCATGAGCGCGAGCGGGGCGGTGGAGAGATCGGCGGAGGGGA
CGACGGACGCGGCGGGGCACTACCGCATCGAGCTGGTGGACAACCGCGGCGCCGAGGAGGTGTGTGCGGTGGCGCTGCTC
AGCAGCCCGGACCCCGAATGCCACGAGACGGAGGTGGGTCGCGACCGCGCGCCGGTCACCCTCGTTCAGGACGCCGGCCT
CGCCACCATGGTCCGCCGCGCCAATCCTCTCGGCTTCCTCAAGACCCGCCCACTCCCCATCTGCGGTGACCTTCTCAAGA
GCTACGCGCTCGGCACCGCACCAAGCTACTAGCTACCTCCTACACTGCTCCCTTTATTATTATTTCCTCTTCTTGCTTTT
ATATTTATATTATACTGAAAAAATACCCGTGCATTATAATGGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis