Browse Element(s) Details


Os.50346.1.S1_at

Description gb:AK120814.1
DB_XREF= gi:37990437
TID=Os.50346.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014M12, full insert sequence.
FL= gb:AK120814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0468011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04650Os.53713.1.S1_at11/115+2172886..2174485expressed protein
LOC_Os05g04660OsAffx.4251.1.S1_at10/115+2174462..2175921uncharacterized domain 1 family protein, expressed
LOC_Os05g04670NANA5+2185023..2186785hypothetical protein
LOC_Os05g04680Os.50346.1.S1_at11/115+2190908..2191625expressed protein
LOC_Os05g04690Os.54044.1.S1_at11/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04690Os.36593.2.S1_x_at1/115+2195575..2196641Basic endochitinase 2 precursor, putative, expressed
LOC_Os05g04700Os.13968.1.S1_a_at6/115+2197918..2198479Uncharacterized protein family protein, expressed
LOC_Os05g04710OsAffx.4252.1.S1_x_at11/115+2200602..2203544incomplete root hair elongation, putative
LOC_Os05g04720NANA5+2204438..2204650hypothetical protein
LOC_Os05g04730OsAffx.19542.3.S1_x_at5/115+2211752..2215974retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50346.1.S1_at--84--4851Chr05:2191026..2191050 (25 bp)
GCTAACCATTAGTATCATCAATCAG
LOC_Os05g04680
Os.50346.1.S1_at--889--9791Chr05:2191067..2191091 (25 bp)
TAAGCTAGCTACTGACCATCGATCG
LOC_Os05g04680
Os.50346.1.S1_at--758--6011Chr05:2191091..2191115 (25 bp)
GAGATGGGTTCTTGGGTTCGCACCA
LOC_Os05g04680
Os.50346.1.S1_at--24--3551Chr05:2191114..2191138 (25 bp)
CATCACGTCGCCATTCAGGAAGGCA
LOC_Os05g04680
Os.50346.1.S1_at--174--10531Chr05:2191127..2191151 (25 bp)
TTCAGGAAGGCACGCACCATCCTCA
LOC_Os05g04680
Os.50346.1.S1_at--29--4451Chr05:2191370..2191394 (25 bp)
GCCTACGAGGACGTCCAGGTCATGT
LOC_Os05g04680
Os.50346.1.S1_at--174--1031Chr05:2191386..2191410 (25 bp)
AGGTCATGTGGTCTATGCTCGACAA
LOC_Os05g04680
Os.50346.1.S1_at--1060--611Chr05:2191400..2191424 (25 bp)
ATGCTCGACAACAAGTCCAGGCTCT
LOC_Os05g04680
Os.50346.1.S1_at--569--7651Chr05:2191520..2191544 (25 bp)
GGGATCGAGTACATACAGCCATTGC
LOC_Os05g04680
Os.50346.1.S1_at--525--1691Chr05:2191536..2191560 (25 bp)
AGCCATTGCACCATCGTTGCAAATT
LOC_Os05g04680
Os.50346.1.S1_at--752--7011Chr05:2191595..2191619 (25 bp)
GTACTAGTCCATTTCATTGTTTTGA
LOC_Os05g04680
Target Sequence 
GCTAACCATTAGTATCATCAATCAGAGAGTGTAGTAGTAGCTAAGCTAGCTACTGACCATCGATCGAGATGGGTTCTTGG
GTTCGCACCATCACGTCGCCATTCAGGAAGGCACGCACCATCCTCAACCAGCAGGCGACCAACACCAGCGGCAGCATCGA
CGAGCATCATCATCGCCACCGCGCCAAGAAGCCGCGCCGCCACTCCTCCTCCTCCTCCGCCGCCGGCACGCCGTCGTCGT
CGTCGTCGTCGTCGACGACGACGGCGACGCGCACCGGCGGCGACGTGGAGGAGGAGGTGGTGATGAGGAGGTCGTCGCAG
CTGTACGGCGACGTGATGGCGTGCGCCTACGAGGACGTCCAGGTCATGTGGTCTATGCTCGACAACAAGTCCAGGCTCTG
CGCCGCCGCCGCCGCCGCCACCTCCTGACGCCGGCCGGCCGGCCGCCATTGACCGGCGATCCATCCATCCATCCATTGCA
TGGAGATCGAGATGGGGATCGAGTACATACAGCCATTGCACCATCGTTGCAAATTTGCAGAGAAATGCAGCAGCATTAGT
AGTTTACTAGTACTAGTCCATTTCATTGTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis