Browse Element(s) Details


Os.5035.1.S1_at

Description gb:AK068019.1
DB_XREF= gi:32978037
TID=Os.5035.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.5035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023033M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013133B03, full insert sequence.
FL= gb:AK059878.1 gb:AK068019.1 gb:AK072325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2219011/11HGA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22160Os.8802.1.S1_at11/112+13200804..13203747expressed protein
LOC_Os02g22170OsAffx.29195.1.A1_at1/112+13206735..13209684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22180NANA2+13210030..13213776Zinc knuckle family protein
LOC_Os02g22190Os.5035.1.S1_at11/112+13223111..13227348HGA1, putative, expressed
LOC_Os02g22190Os.20614.3.S1_x_at2/112+13223111..13227348HGA1, putative, expressed
LOC_Os02g22190Os.57121.1.S1_at1/112+13223111..13227348HGA1, putative, expressed
LOC_Os02g22200OsAffx.12156.1.S1_at11/112+13231476..13231748hypothetical protein
LOC_Os02g22210Os.46785.2.S1_x_at3/112+13234518..13239877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g22210OsAffx.442.1.S1_x_at1/112+13234518..13239877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g22210OsAffx.30226.2.S1_x_at1/112+13234518..13239877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g22220NANA2+13251320..13252030retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5035.1.S1_at--7--5231Chr02:13223678..13223702 (25 bp)
GAATTTGTTCGCCTTGTTGACTCCT
LOC_Os02g22190
Os.5035.1.S1_at--494--6651Chr02:13223663..13223687 (25 bp)
GTTGACTCCTGCGATGCAATCATGG
LOC_Os02g22190
Os.5035.1.S1_at--789--9131Chr02:13223628..13223652 (25 bp)
TGCGGGCTTGACTAACATGGTGTTC
LOC_Os02g22190
Os.5035.1.S1_at--552--8611Chr02:13223584..13223608 (25 bp)
TGGTGCACATTGTGCCATACGGGAT
LOC_Os02g22190
Os.5035.1.S1_at--802--10091Chr02:13223537..13223561 (25 bp)
TATGGTGCACCTGCACGGGACATGG
LOC_Os02g22190
Os.5035.1.S1_at--331--4691Chr02:13223390..13223414 (25 bp)
GCGGAGTTCTACATGTCCAAACAGG
LOC_Os02g22190
Os.5035.1.S1_at--913--7271Chr02:13223376..13223400 (25 bp)
GTCCAAACAGGACATTGTGCTCAAT
LOC_Os02g22190
Os.5035.1.S1_at--39--7871Chr02:13223344..13223368 (25 bp)
GGTTTGGACCTAGCCTGTTGAATGC
LOC_Os02g22190
Os.5035.1.S1_at--1060--8671Chr02:13223281..13223305 (25 bp)
TGTGTTTGTTTTAGCTACAGCATTC
LOC_Os02g22190
Os.5035.1.S1_at--317--4851Chr02:13223268..13223292 (25 bp)
GCTACAGCATTCTACAGTCACGAAA
LOC_Os02g22190
Os.5035.1.S1_at--310--351Chr02:13223122..13223146 (25 bp)
ATAAACCTGTGTGCTGAGTTTTCTT
LOC_Os02g22190
Target Sequence 
GAATTTGTTCGCCTTGTTGACTCCTGCGATGCAATCATGGGCGTGCATGGTGCGGGCTTGACTAACATGGTGTTCCTGCG
GTCCGGGGGAGTGGTGGTGCACATTGTGCCATACGGGATCAAATTCATGGCTGATGGGTTCTATGGTGCACCTGCACGGG
ACATGGGTCTGAGACATGTCGAGTACAGCATCAGTCCAGAAGAGAGCACACTGCTGGAGAAATACGGTTGGAACCATACT
GTTATCAATGATCCTGAAACCATCAGGAAGGGCGGATGGGAGAAGGTTGCGGAGTTCTACATGTCCAAACAGGACATTGT
GCTCAATATGACAAGGTTTGGACCTAGCCTGTTGAATGCAATAGAGTTCATTATGTAAGTTTGTGAAATGAGGTTTTTGT
GTTTGTTTTAGCTACAGCATTCTACAGTCACGAAAAAAATACACTTTTTTGTTGGCCATAGGTGGAATAGGTATTGTTGT
TTTAGTGCTGCTTCTGTATAGGATTGTCGGTGTTAGATTTGAATAACCATGATCAACTGTTACAGGAAAGATGACAATAA
ACCTGTGTGCTGAGTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis