Browse Element(s) Details


OsAffx.12156.1.S1_at

Description tigr:9630.m02136
TID=OsAffx.12156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2220011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22170OsAffx.29195.1.A1_at1/112+13206735..13209684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22180NANA2+13210030..13213776Zinc knuckle family protein
LOC_Os02g22190Os.5035.1.S1_at11/112+13223111..13227348HGA1, putative, expressed
LOC_Os02g22190Os.20614.3.S1_x_at2/112+13223111..13227348HGA1, putative, expressed
LOC_Os02g22190Os.57121.1.S1_at1/112+13223111..13227348HGA1, putative, expressed
LOC_Os02g22200OsAffx.12156.1.S1_at11/112+13231476..13231748hypothetical protein
LOC_Os02g22210Os.46785.2.S1_x_at3/112+13234518..13239877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g22210OsAffx.442.1.S1_x_at1/112+13234518..13239877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g22210OsAffx.30226.2.S1_x_at1/112+13234518..13239877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g22220NANA2+13251320..13252030retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12156.1.S1_at--1087--8351Chr02:13231506..13231530 (25 bp)
GGCGGAGCAGATCAGCGTGGTCGGT
LOC_Os02g22200
OsAffx.12156.1.S1_at--946--6431Chr02:13231515..13231539 (25 bp)
GATCAGCGTGGTCGGTGGCGGGTCC
LOC_Os02g22200
OsAffx.12156.1.S1_at--977--7791Chr02:13231535..13231559 (25 bp)
GGTCCCCTTGGAACAGTGCTGGCGA
LOC_Os02g22200
OsAffx.12156.1.S1_at--1005--10751Chr02:13231542..13231566 (25 bp)
TTGGAACAGTGCTGGCGACCGAGAT
LOC_Os02g22200
OsAffx.12156.1.S1_at--841--2131Chr02:13231547..13231571 (25 bp)
ACAGTGCTGGCGACCGAGATTTGGA
LOC_Os02g22200
OsAffx.12156.1.S1_at--874--5811Chr02:13231558..13231582 (25 bp)
GACCGAGATTTGGAGAGGACGACAC
LOC_Os02g22200
OsAffx.12156.1.S1_at--703--1851Chr02:13231576..13231600 (25 bp)
ACGACACGGCTGGAGTAGAGGCGGT
LOC_Os02g22200
OsAffx.12156.1.S1_at--686--8451Chr02:13231600..13231624 (25 bp)
TGGCCAAGCTGAGCCTAGATGGTGT
LOC_Os02g22200
OsAffx.12156.1.S1_at--52--4391Chr02:13231603..13231627 (25 bp)
CCAAGCTGAGCCTAGATGGTGTGGA
LOC_Os02g22200
OsAffx.12156.1.S1_at--761--1371Chr02:13231660..13231684 (25 bp)
AGACGCGAAGGATGGCACCGGCAAT
LOC_Os02g22200
OsAffx.12156.1.S1_at--1157--7491Chr02:13231693..13231717 (25 bp)
GTGGTCCCCCTGGTAGGATGGCATC
LOC_Os02g22200
Target Sequence 
GGCGGAGCAGATCAGCGTGGTCGGTGGCGGGTCCCCTTGGAACAGTGCTGGCGACCGAGATTTGGAGAGGACGACACGGC
TGGAGTAGAGGCGGTGGCCAAGCTGAGCCTAGATGGTGTGGAGAGTGAGAAGGATGGAGTTGGCGATGAGCTGGAGACGC
GAAGGATGGCACCGGCAATGGTGTTGGGTGGTCCCCCTGGTAGGATGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis