Browse Element(s) Details


Os.50377.1.S1_at

Description gb:AK120940.1
DB_XREF= gi:37990563
TID=Os.50377.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037H21, full insert sequence.
FL= gb:AK120940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g578309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57780OsAffx.26647.1.S1_at10/114+34191367..34194102TPR Domain containing protein, expressed
LOC_Os04g57790Os.49179.1.S1_at11/114+34194379..34196563Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA
LOC_Os04g57830Os.50377.1.S1_at9/114+34217596..34219647expressed protein
LOC_Os04g57840Os.52864.1.S1_at11/114+34221269..34225011transposon protein, putative, unclassified, expressed
LOC_Os04g57850Os.54727.1.S1_s_at11/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57850Os.19444.1.S1_at4/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57860Os.50125.1.S1_at11/114+34231500..34235279Glycosyl hydrolase family 9 protein, expressed
LOC_Os04g57870Os.56969.1.S1_at11/114+34238005..34244668expressed protein
LOC_Os04g57870Os.51820.1.S1_at11/114+34238005..34244668expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50377.1.S1_at--97--2951Chr04:34219094..34219118 (25 bp)
AAGGCGAGCTACCTTAGCCTTTGCT
LOC_Os04g57830
Os.50377.1.S1_at--215--10291Chr04:34219113..34219137 (25 bp)
TTTGCTGCTTGTCCTCATTAGTACT
LOC_Os04g57830
Os.50377.1.S1_at--658--4291Chr04:34219125..34219149 (25 bp)
CCTCATTAGTACTTCACCACTGTAA
LOC_Os04g57830
Os.50377.1.S1_at--407--151Chr04:34219149..34219173 (25 bp)
ATTAGAGCTAGGTCAGTTCACTGCA
LOC_Os04g57830
Os.50377.1.S1_at--79--9691Chr04:34219166..34219190 (25 bp)
TCACTGCACAACATTTATCTTTCCC
LOC_Os04g57830
Os.50377.1.S1_at--773--511Chr04:34219254..34219278 (25 bp)
ATCGTATTCCAAACTGCCATTTCTG
LOC_Os04g57830
Os.50377.1.S1_at--964--7871Chr04:34219355..34219379 (25 bp)
GGTTCTGTCCTGAGCAGGTGGAAAT
LOC_Os04g57830
Os.50377.1.S1_at--906--1051Chr04:34219370..34219394 (25 bp)
AGGTGGAAATCACGCTTGTGCAGAA
LOC_Os04g57830
Os.50377.1.S1_at--551--2411NONE
AAAACACCATCTCTACGGTCCTTGA
NONE
Os.50377.1.S1_at--121--7851Chr04:34219582..34219606 (25 bp)
GGTACCAAATGCTACCATCCAAAAG
LOC_Os04g57830
Os.50377.1.S1_at--18--351NONE
ATAAAAGTCATGTGATTCTCCCACC
NONE
Target Sequence 
AAGGCGAGCTACCTTAGCCTTTGCTGCTTGTCCTCATTAGTACTTCACCACTGTAATTAGAGCTAGGTCAGTTCACTGCA
CAACATTTATCTTTCCCCCTACTTTGGCAAAAAGAAAAGTTAATTAGAACACTACAAAATTCATGTAAAATTTTAAACTT
ATCGTATTCCAAACTGCCATTTCTGAGTAAAAAAAATTAAGAGAGAGAGAAATGAAGTGAAGTGAAGGAGGCAGAGGCAG
AGCCGCCAGGGCGGTGGTGGGGGTTCTGTCCTGAGCAGGTGGAAATCACGCTTGTGCAGAAAGAGATCTGAAGGAGGCGA
AAAGAAAAGAGAGAGAGAGAGAGCAAAAGCAAAACACCATCTCTACGGTCCTTGAGTAGATACTATGAGGTACTAAAAAT
TTAGTGTAAAAATTAGTATCTCATGGTACCTTATAGTATTTAGATACCAAGAGGTATCAAATTTATAATAGAAAAAATGG
TATCTCATGGTACCAAATGCTACCATCCAAAAGCTAACATAACCCCCACATAAAAGTCATGTGATTCTCCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis