Browse Element(s) Details


Os.50386.1.S1_at

Description gb:AK120987.1
DB_XREF= gi:37990610
TID=Os.50386.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042L02, full insert sequence.
FL= gb:AK120987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3501011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34960NANA5+20682980..20686125hypothetical protein
LOC_Os05g34970NANA5+20690333..20691413hypothetical protein
LOC_Os05g34980Os.11846.1.S1_at11/115+20695884..20698097amino acid carrier, putative, expressed
LOC_Os05g34990OsAffx.27170.1.S1_at11/115+20704991..20705565hypothetical protein
LOC_Os05g35000OsAffx.27171.1.S1_at11/115+20707159..20708951hypothetical protein
LOC_Os05g35000OsAffx.17306.1.S1_x_at1/115+20707159..20708951hypothetical protein
LOC_Os05g35010Os.50386.1.S1_at11/115+20709347..20711181Cytochrome P450 family protein, expressed
LOC_Os05g35020OsAffx.27172.1.S1_at11/115+20713010..20713960hypothetical protein
LOC_Os05g35030OsAffx.14966.1.S1_at11/115+20716638..20717135hypothetical protein
LOC_Os05g35030OsAffx.22005.1.S1_x_at1/115+20716638..20717135hypothetical protein
LOC_Os05g35040OsAffx.14967.1.S1_at11/115+20719279..20719603hypothetical protein
LOC_Os05g35050Os.31094.1.S1_at9/115+20720832..20721704Ctr copper transporter family protein, expressed
LOC_Os05g35060Os.50400.1.S1_at11/115+20723871..20728032Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35070OsAffx.14968.1.S1_at11/115+20733836..20737594hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50386.1.S1_at--451--8691Chr05:20709606..20709630 (25 bp)
TGTGCCCCGGGATGCAGTTCGCGCT
LOC_Os05g35010
Os.50386.1.S1_at--1002--4251Chr05:20709554..20709578 (25 bp)
CCTGGTCCGCCTCTTCGACTGGGAG
LOC_Os05g35010
Os.50386.1.S1_at--779--5651Chr05:20709508..20709532 (25 bp)
GACATGTCCGACGACCCGGGATTCA
LOC_Os05g35010
Os.50386.1.S1_at--797--1851Chr05:20709498..20709522 (25 bp)
ACGACCCGGGATTCACCGTGCGGCG
LOC_Os05g35010
Os.50386.1.S1_at--447--9331Chr05:20709453..20709477 (25 bp)
TCGCCAAGCCGGTCGGGTCAGAAGA
LOC_Os05g35010
Os.50386.1.S1_at--635--2651Chr05:20709448..20709472 (25 bp)
AAGCCGGTCGGGTCAGAAGACGACA
LOC_Os05g35010
Os.50386.1.S1_at--494--5371Chr05:20709433..20709457 (25 bp)
GAAGACGACAAGTAGCCGAATAGTG
LOC_Os05g35010
Os.50386.1.S1_at--853--4511Chr05:20709419..20709443 (25 bp)
GCCGAATAGTGTGATCTGTGTGTTT
LOC_Os05g35010
Os.50386.1.S1_at--760--10351Chr05:20709387..20709411 (25 bp)
TTTTGTCTGGGAGACGGGAGACCGC
LOC_Os05g35010
Os.50386.1.S1_at--855--8051Chr05:20709371..20709395 (25 bp)
GGAGACCGCGTGGACTGTGTTAATT
LOC_Os05g35010
Os.50386.1.S1_at--723--5791Chr05:20709368..20709392 (25 bp)
GACCGCGTGGACTGTGTTAATTTAG
LOC_Os05g35010
Target Sequence 
TGTGCCCCGGGATGCAGTTCGCGCTCGCCACCGTCGAGCTCGCGCTGGCCAGCCTGGTCCGCCTCTTCGACTGGGAGATC
CCGCCGCCCGGGGAGCTCGACATGTCCGACGACCCGGGATTCACCGTGCGGCGGCGGATCCCTCTCCGGCTCGTCGCCAA
GCCGGTCGGGTCAGAAGACGACAAGTAGCCGAATAGTGTGATCTGTGTGTTTTTTTTTTTTTTGTCTGGGAGACGGGAGA
CCGCGTGGACTGTGTTAATTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis