Browse Element(s) Details


Os.50389.1.S1_at

Description gb:AK120995.1
DB_XREF= gi:37990618
TID=Os.50389.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043P11, full insert sequence.
FL= gb:AK120995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4287011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42830Os.14919.1.S1_at4/118+26947842..26951738Transposable element protein, putative, MuDR
LOC_Os08g42840OsAffx.29638.1.S1_at11/118+26953583..26956405Leucine Rich Repeat family protein
LOC_Os08g42850Os.8230.1.S1_at11/118+26958008..26960497FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor, putative, expressed
LOC_Os08g42860OsAffx.20354.1.S1_at2/118+26965938..26968659retrotransposon protein, putative, unclassified
LOC_Os08g42870Os.50389.1.S1_at11/118+26970473..26976632expressed protein
LOC_Os08g42880NANA8+26982758..26983288hypothetical protein
LOC_Os08g42890OsAffx.6116.1.S1_at11/118+26985960..26986502pectinesterase inhibitor domain containing protein
LOC_Os08g42900OsAffx.6117.1.S1_at11/118+26987795..26988501NA
LOC_Os08g42910NANA8+26990641..26994443Methionine aminopeptidase 2, putative, expressed
LOC_Os08g42920Os.9188.1.S1_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42920Os.9188.1.S1_x_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42930Os.53729.1.S1_at11/118+26997252..27000882NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50389.1.S1_at--222--9711Chr08:26970980..26971004 (25 bp)
TCAACGACTGGCTCAGCGAGATAGC
LOC_Os08g42870
Os.50389.1.S1_at--752--4611Chr08:26970965..26970989 (25 bp)
GCGAGATAGCGAAGCCCACGGAACC
LOC_Os08g42870
Os.50389.1.S1_at--1142--4191Chr08:26970888..26970911 (24 bp)
CCCGTTGCGAATGGAGGCGGCAACA
LOC_Os08g42870
Os.50389.1.S1_at--980--7171Chr08:26970744..26970768 (25 bp)
GTCTGAGCGACATGGGCCGTCAGAT
LOC_Os08g42870
Os.50389.1.S1_at--883--791Chr08:26970733..26970757 (25 bp)
ATGGGCCGTCAGATCTTGCACGAAT
LOC_Os08g42870
Os.50389.1.S1_at--1026--5091Chr08:26970716..26970740 (25 bp)
GCACGAATCTCGAGGCCAGCATGGG
LOC_Os08g42870
Os.50389.1.S1_at--1060--7631Chr08:26970693..26970717 (25 bp)
GGGAGGCTTAACTGGCCTCGCAAAT
LOC_Os08g42870
Os.50389.1.S1_at--715--1231Chr08:26970662..26970686 (25 bp)
AGTTGTGGCCCGCTTTCGAGTTCTA
LOC_Os08g42870
Os.50389.1.S1_at--1103--4191Chr08:26970654..26970678 (25 bp)
CCCGCTTTCGAGTTCTATCTAGAAT
LOC_Os08g42870
Os.50389.1.S1_at--724--191Chr08:26970631..26970655 (25 bp)
ATTTCTGCATTCTCTAAAAGAGCAT
LOC_Os08g42870
Os.50389.1.S1_at--526--131Chr08:26970483..26970507 (25 bp)
ATTACACTCGTAATACAGGGACAAC
LOC_Os08g42870
Target Sequence 
TCAACGACTGGCTCAGCGAGATAGCGAAGCCCACGGAACCGCCGCCGCCGCAATCCGACGCCGACGGCGAGGAGGCCGGC
GGCGGCGCCCCCGCCCGTTGCGAATGGAGGCGGCAACACCGTGCCGGAGGAGACGATAGAGCGGCTGCGGGAGAAGATCT
ACGAGTACCTCCTCACCAACGTCGACTCGGCCGCCTCCGTGCTGGGCGGCGCCGGCGCGGCAGCGAACGGGAAGAGGGTC
TGAGCGACATGGGCCGTCAGATCTTGCACGAATCTCGAGGCCAGCATGGGGAGGCTTAACTGGCCTCGCAAATGGGGTGA
GTTGTGGCCCGCTTTCGAGTTCTATCTAGAATTTCTGCATTCTCTAAAAGAGCATTCTAAAATCTAAATTTGATGCGGAA
AATGAAAAAGAGAAGGTAATTTGTAATGATAATGATGTATACAGTAATACAATTGATTGTTTCGATTGTTGAAATGAAAA
AAGAAAATGAAAGAGTAAATTACACTCGTAATACAGGGACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis