Browse Element(s) Details


Os.50403.1.S1_at

Description gb:AK121068.1
DB_XREF= gi:37990691
TID=Os.50403.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061D24, full insert sequence.
FL= gb:AK121068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3021010/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30170Os.8024.1.S1_at11/117+17818872..17822043Beta-ureidopropionase, putative, expressed
LOC_Os07g30180OsAffx.32258.1.A1_at3/117+17823790..17827524transposon protein, putative, Mutator sub-class
LOC_Os07g30190NANA7+17830368..17836580retrotransposon protein, putative, unclassified
LOC_Os07g30200Os.27164.1.A1_a_at11/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.27164.2.S1_at7/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.39963.1.S1_at1/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30210Os.50403.1.S1_at10/117+17844131..17847023Integral membrane protein DUF6 containing protein, expressed
LOC_Os07g30220Os.15994.1.S1_at11/117+17849521..17852776expressed protein
LOC_Os07g30220OsAffx.7245.1.S1_x_at1/117+17849521..17852776expressed protein
LOC_Os07g30220OsAffx.2609.2.S1_x_at1/117+17849521..17852776expressed protein
LOC_Os07g30230OsAffx.22940.2.S1_s_at11/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230Os.35344.3.S1_x_at11/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.5.S1_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.5.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230Os.35344.18.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.3.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.1.S1_s_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.2.S1_at8/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.31552.2.S1_at1/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30240Os.52801.1.S1_at9/117+17868931..17878469MutS family domain IV containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50403.1.S1_at--1112--9251NONE
TCCTCCTCGTGGGCGGGCTAGTAAG
NONE
Os.50403.1.S1_at--827--9791Chr07:17844533..17844557 (25 bp)
TAAGCTCGGTGTGCGTGATGTTCCA
LOC_Os07g30210
Os.50403.1.S1_at--889--9431Chr07:17844528..17844552 (25 bp)
TCGGTGTGCGTGATGTTCCAGACAT
LOC_Os07g30210
Os.50403.1.S1_at--920--3991Chr07:17844520..17844544 (25 bp)
CGTGATGTTCCAGACATGGGCGCTG
LOC_Os07g30210
Os.50403.1.S1_at--577--7491Chr07:17844480..17844504 (25 bp)
GTGGTGGTCTCCCTCTTTAGCCCGA
LOC_Os07g30210
Os.50403.1.S1_at--268--5031Chr07:17844454..17844478 (25 bp)
GCAGACCGTCGGATCGGCGATCTTC
LOC_Os07g30210
Os.50403.1.S1_at--646--9571Chr07:17844434..17844458 (25 bp)
TCTTCTCGGCCTTGTTCTTGGGTAG
LOC_Os07g30210
Os.50403.1.S1_at--768--9211Chr07:17844404..17844428 (25 bp)
TCCACCCAGTGAGGTATAGTTCTTC
LOC_Os07g30210
Os.50403.1.S1_at--864--6151Chr07:17844394..17844418 (25 bp)
GAGGTATAGTTCTTCTCTCACTATG
LOC_Os07g30210
Os.50403.1.S1_at--363--1231Chr07:17844387..17844411 (25 bp)
AGTTCTTCTCTCACTATGTGCATAT
LOC_Os07g30210
Os.50403.1.S1_at--469--3751Chr07:17844378..17844402 (25 bp)
CTCACTATGTGCATATATAGGGCAT
LOC_Os07g30210
Target Sequence 
TCCTCCTCGTGGGCGGGCTAGTAAGCTCGGTGTGCGTGATGTTCCAGACATGGGCGCTGGAGAAGAAAGGGCCCGTGGTG
GTCTCCCTCTTTAGCCCGACGCAGACCGTCGGATCGGCGATCTTCTCGGCCTTGTTCTTGGGTAGGGTGGTCCACCCAGT
GAGGTATAGTTCTTCTCTCACTATGTGCATATATAGGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis