Browse Element(s) Details


Os.50437.1.S1_at

Description gb:AK121196.1
DB_XREF= gi:37990819
TID=Os.50437.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086N16, full insert sequence.
FL= gb:AK121196.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5048011/11Phosphoglucomutase, cytoplasmic 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50450Os.49263.1.S1_at11/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.3066.1.S1_at2/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.41315.1.S1_x_at1/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50470Os.54369.1.S1_at10/113+28754018..28759470expressed protein
LOC_Os03g50470Os.37705.2.S1_x_at3/113+28754018..28759470expressed protein
LOC_Os03g50480Os.5894.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50480Os.50437.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50490Os.48875.1.S1_at10/113+28771610..28775543Glutamine synthetase root isozyme 2, putative, expressed
LOC_Os03g50500OsAffx.3564.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50500Os.3075.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50510OsAffx.13440.1.S1_at10/113+28788451..28793744Threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0019252biological_processstarch biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0009570cellular_componentchloroplast stroma
GO:0004614molecular_functionphosphoglucomutase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50437.1.S1_at--193--2011Chr03:28763040..28763064 (25 bp)
ACTAGGGCCCCGATCTGGATCTAGG
LOC_Os03g50480
Os.50437.1.S1_at--212--6411Chr03:28763189..28763213 (25 bp)
GATCTGATACTGACTCCGATGCTCG
LOC_Os03g50480
Os.50437.1.S1_at--600--9331Chr03:28763211..28763235 (25 bp)
TCGCCGTCTCGAGTCTGGAATGTGC
LOC_Os03g50480
Os.50437.1.S1_at--745--6631Chr03:28763253..28763277 (25 bp)
GTTGATTTTGTTTGTCCCGCGACCA
LOC_Os03g50480
Os.50437.1.S1_at--496--4351Chr03:28763275..28763299 (25 bp)
CCAGTCGGATCAGTTAGTCTCGTCT
LOC_Os03g50480
Os.50437.1.S1_at--763--1151Chr03:28763290..28763314 (25 bp)
AGTCTCGTCTGGAGCGTTGGATCGA
LOC_Os03g50480
Os.50437.1.S1_at--580--4051Chr03:28763312..28763336 (25 bp)
CGATGCCGGATTCGATTGATCTGAA
LOC_Os03g50480
Os.50437.1.S1_at--558--6911Chr03:28763339..28763363 (25 bp)
GTATGCGTTCGTGGGATTTGATTCA
LOC_Os03g50480
Os.50437.1.S1_at--471--4871Chr03:28763393..28763417 (25 bp)
GCTTTGGCTAATTGTATCGGGATCT
LOC_Os03g50480
Os.50437.1.S1_at--155--6531Chr03:28763456..28763480 (25 bp)
GATTTGAGCCCGAGCAGATACCGAA
LOC_Os03g50480
Os.50437.1.S1_at--166--6951Chr03:28763482..28763506 (25 bp)
GTAGATAGTGACTGTGTGCCCTCTG
LOC_Os03g50480
Target Sequence 
ACTAGGGCCCCGATCTGGATCTAGGCGCGACGCGTGGTGGATGGGTAAAGGTTGTCCCGATCTCCGGGTTCCCGCCGCGG
ATCTCGTCGGCGGTTTGCTCGCGGCGCGGGGGCCTTTTCGGCTCTCGCCTGAATGGTGGCGTGGGCTGGGATCTGATACT
GACTCCGATGCTCGCCGTCTCGAGTCTGGAATGTGCGGTTCCTCGTTGCGGTGGTTGATTTTGTTTGTCCCGCGACCAGT
CGGATCAGTTAGTCTCGTCTGGAGCGTTGGATCGATGCCGGATTCGATTGATCTGAATTGTATGCGTTCGTGGGATTTGA
TTCAGGAGATTTTTTTTTCGCTCTCATTGATTAGCTTTGGCTAATTGTATCGGGATCTTGCCGAGTAGTTTTTTTTTATT
TTTACTCATTGTTAGCGATTTGAGCCCGAGCAGATACCGAAGGTAGATAGTGACTGTGTGCCCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis