Browse Element(s) Details


Os.50467.1.S1_at

Description gb:AK121312.1
DB_XREF= gi:37990935
TID=Os.50467.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50467 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112O04, full insert sequence.
FL= gb:AK121312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4862011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48590OsAffx.21308.1.S1_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48590Os.41653.1.S1_x_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48596Os.52524.1.S1_at10/117+29090310..29092447transfactor, putative, expressed
LOC_Os07g48602Os.10916.1.S1_at11/117+29094835..29098167expressed protein
LOC_Os07g48610Os.53114.1.S1_at11/117+29108210..29110097hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g48620Os.50467.1.S1_at11/117+29110603..29113698expressed protein
LOC_Os07g48630Os.10423.1.S1_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.10423.1.S1_s_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.12691.3.S1_x_at1/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48640Os.36076.1.S1_at11/117+29120197..29123265oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g48650Os.49915.1.A1_at11/117+29128580..29131180Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50467.1.S1_at--292--1971Chr07:29113126..29113150 (25 bp)
ACTGTCAGTTTCTTTGAGTCTCATC
LOC_Os07g48620
Os.50467.1.S1_at--1118--2151Chr07:29113181..29113205 (25 bp)
ACAGCCATCCCCATATGTTTTAAAA
LOC_Os07g48620
Os.50467.1.S1_at--272--7411Chr07:29113234..29113258 (25 bp)
GTGATTATTCCGCTTTTGTTCTTCC
LOC_Os07g48620
Os.50467.1.S1_at--1134--191Chr07:29113471..29113495 (25 bp)
ATTTGGAGCCGACAGGGCCCAGATT
LOC_Os07g48620
Os.50467.1.S1_at--396--8411Chr07:29113486..29113510 (25 bp)
GGCCCAGATTTGGTGGCATCAGCAT
LOC_Os07g48620
Os.50467.1.S1_at--456--7791Chr07:29113511..29113535 (25 bp)
GGTAGCTTATACTCCTAAATCCATA
LOC_Os07g48620
Os.50467.1.S1_at--812--2271Chr07:29113527..29113551 (25 bp)
AAATCCATAGCTCACAACTGGCTCG
LOC_Os07g48620
Os.50467.1.S1_at--312--2571Chr07:29113542..29113566 (25 bp)
AACTGGCTCGAATGTTCATCGGAGA
LOC_Os07g48620
Os.50467.1.S1_at--595--3571Chr07:29113579..29113603 (25 bp)
CATTCAGTTATAAGTGTTCCCTCCC
LOC_Os07g48620
Os.50467.1.S1_at--489--4191Chr07:29113602..29113626 (25 bp)
CCCTGTTTCAACCATAGCATCTGAT
LOC_Os07g48620
Os.50467.1.S1_at--974--1391Chr07:29113638..29113662 (25 bp)
AGACATTTTTAAGCCCATTTCGAGA
LOC_Os07g48620
Target Sequence 
ACTGTCAGTTTCTTTGAGTCTCATCTGAAGACTGGAAGGGTTTCAGATAAAATAAACAGCCATCCCCATATGTTTTAAAA
CAGCTGTATATTAGTTCTACTTTAATGAGTGATTATTCCGCTTTTGTTCTTCCTCCTACCGATTTCATAATTAAACATTG
ACCAAAAGTAGAGGATTATTGGTGAACCATACCATGGGAATGTTAAATTATCTCTAGTCACACTAGCCATTTTTTTAATC
CTGTAAACGGCTGAAGGCATATGTTAATCACAAACCAAATCGTGTACATAAAAAAATTGCAAGGACCTATTTTTTAAGAG
TCAGATTAGGTAGATCTCAAGAATGATTTGGAGCCGACAGGGCCCAGATTTGGTGGCATCAGCATGGTAGCTTATACTCC
TAAATCCATAGCTCACAACTGGCTCGAATGTTCATCGGAGAGGCATCTTAATTCATTCAGTTATAAGTGTTCCCTCCCCT
GTTTCAACCATAGCATCTGATTAAAAATCTTCAGACATTTTTAAGCCCATTTCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis