Browse Element(s) Details


Os.50474.1.S1_at

Description gb:AK121345.1
DB_XREF= gi:37990968
TID=Os.50474.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121C14, full insert sequence.
FL= gb:AK121345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4016011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40110OsAffx.23890.2.S1_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.2.S1_x_at5/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40110OsAffx.23890.4.S1_x_at1/115+23481901..23487452retrotransposon protein, putative, unclassified
LOC_Os05g40120NANA5+23487966..23488975hypothetical protein
LOC_Os05g40130OsAffx.4570.1.S1_at11/115+23489476..23490046hypothetical protein
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified
LOC_Os05g40150OsAffx.27252.1.S1_at11/115+23498045..23502194NB-ARC domain containing protein
LOC_Os05g40160Os.50474.1.S1_at11/115+23503562..23507180NB-ARC domain containing protein, expressed
LOC_Os05g40170Os.4820.1.S1_at11/115+23509834..23512004expressed protein
LOC_Os05g40180OsAffx.27253.1.S1_x_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40180Os.51130.1.S1_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_s_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.51130.2.S1_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.52273.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50474.1.S1_at--1019--3871Chr05:23506794..23506818 (25 bp)
CTGTAGCTCAACCAACTAGTTCAGG
LOC_Os05g40160
Os.50474.1.S1_at--1153--6231Chr05:23506820..23506844 (25 bp)
GATGGACTGAACTCTAGCCTCAATA
LOC_Os05g40160
Os.50474.1.S1_at--187--9791Chr05:23506843..23506867 (25 bp)
TAAGATCAGACTTTCAGAGCCTCCT
LOC_Os05g40160
Os.50474.1.S1_at--898--1671Chr05:23506860..23506884 (25 bp)
AGCCTCCTTCTTCACGACTTGAGAT
LOC_Os05g40160
Os.50474.1.S1_at--128--5691Chr05:23506875..23506899 (25 bp)
GACTTGAGATGCCTGTTCGTCATAT
LOC_Os05g40160
Os.50474.1.S1_at--885--6711Chr05:23506889..23506913 (25 bp)
GTTCGTCATATGGTGGATGGCCACT
LOC_Os05g40160
Os.50474.1.S1_at--359--1411Chr05:23506927..23506951 (25 bp)
AGACTTCCTTGGCAAACCTCTAGCA
LOC_Os05g40160
Os.50474.1.S1_at--602--2371Chr05:23506940..23506964 (25 bp)
AAACCTCTAGCACAATATACCACTG
LOC_Os05g40160
Os.50474.1.S1_at--514--2991Chr05:23506980..23507004 (25 bp)
AATGAAGACCATCCAAATTTTGCTA
LOC_Os05g40160
Os.50474.1.S1_at--661--8151Chr05:23507014..23507038 (25 bp)
GGAAATCTAGATTGCTGTTCAGTTA
LOC_Os05g40160
Os.50474.1.S1_at--717--6531Chr05:23507048..23507072 (25 bp)
GATTTCTGTATTTCCGTACTTGTCA
LOC_Os05g40160
Target Sequence 
CTGTAGCTCAACCAACTAGTTCAGGTGATGGACTGAACTCTAGCCTCAATAAGATCAGACTTTCAGAGCCTCCTTCTTCA
CGACTTGAGATGCCTGTTCGTCATATGGTGGATGGCCACTGAGGCAGCACCCCAGACTTCCTTGGCAAACCTCTAGCACA
ATATACCACTGCAGCTGGCAGACTTCAATGAAGACCATCCAAATTTTGCTAAAAAAACTTGGAAATCTAGATTGCTGTTC
AGTTAAATGGTCCAGATTTCTGTATTTCCGTACTTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis