Browse Element(s) Details


Os.50484.1.S1_at

Description gb:AK121391.1
DB_XREF= gi:37991014
TID=Os.50484.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50484 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023129D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023129D04, full insert sequence.
FL= gb:AK121391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3420011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34160OsAffx.30135.1.S1_at11/119+20162189..20167295NB-ARC domain containing protein, expressed
LOC_Os09g34170NANA9+20171841..20172152hypothetical protein
LOC_Os09g34180Os.6745.1.S1_at11/119+20179233..20182541FH protein NFH2, putative, expressed
LOC_Os09g34190Os.9110.1.S1_at11/119+20182857..20185813thioesterase family protein, expressed
LOC_Os09g34200Os.50484.1.S1_at11/119+20186675..20191104F-box domain containing protein
LOC_Os09g34200OsAffx.30137.1.S1_at10/119+20186675..20191104F-box domain containing protein
LOC_Os09g34214OsAffx.32335.1.S1_x_at3/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34214Os.26688.1.S3_s_at1/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230Os.10546.1.S1_s_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230OsAffx.30138.1.S1_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50484.1.S1_at--880--7131Chr09:20188596..20188620 (25 bp)
GTCTTAATTGGGTGGCGCAGAATCA
LOC_Os09g34200
Os.50484.1.S1_at--966--11Chr09:20188602..20188626 (25 bp)
ATTGGGTGGCGCAGAATCAGGACAT
LOC_Os09g34200
Os.50484.1.S1_at--174--8131Chr09:20188621..20188645 (25 bp)
GGACATGGATAATTTAGAGGCTCGT
LOC_Os09g34200
Os.50484.1.S1_at--473--10291Chr09:20188633..20188657 (25 bp)
TTTAGAGGCTCGTGTGGATAAACTA
LOC_Os09g34200
Os.50484.1.S1_at--206--4211Chr09:20189473..20189497 (25 bp)
CCCCTTCTGTGGATAAAATTCTGAC
LOC_Os09g34200
Os.50484.1.S1_at--1033--91Chr09:20189534..20189558 (25 bp)
ATTCGCGATCTCAAGGTACAATTGT
LOC_Os09g34200
Os.50484.1.S1_at--214--7831Chr09:20189548..20189572 (25 bp)
GGTACAATTGTACAAAGGTGCTATT
LOC_Os09g34200
Os.50484.1.S1_at--974--2891Chr09:20189562..20189586 (25 bp)
AAGGTGCTATTAAGGCTGTGTTCGT
LOC_Os09g34200
Os.50484.1.S1_at--201--2951Chr09:20189573..20189597 (25 bp)
AAGGCTGTGTTCGTTGATTGCTGTC
LOC_Os09g34200
Os.50484.1.S1_at--927--7411Chr09:20189579..20189603 (25 bp)
GTGTTCGTTGATTGCTGTCGGTAAC
LOC_Os09g34200
Os.50484.1.S1_at--797--8711Chr09:20189594..20189618 (25 bp)
TGTCGGTAACAAATCTCTCTCGCGC
LOC_Os09g34200
Target Sequence 
GTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCTCGTGTGGATAAACTAANTAAATTGAGGCATGTG
ATGATGTCTTCCGGACGGCAAGAAGTTGGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTC
GACCTCCAACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGNGNTGATATGAAGATTATANAACTTTTTCCTGGCA
TTTNGNGTTTCTGGGACAATTCTTGCTGCTACGNCCTNCGTTNTATCATCCANNTTTTTTGTTTGNGAACCTCCCCTTCT
GTGGATAAAATTCTGACTGATGATAGTANTTNTTCGATAGACCGTGCATCCGGATTCGCGATCTCAAGGTACAATTGTAC
AAAGGTGCTATTAAGGCTGTGTTCGTTGATTGCTGTCGGTAACAAATCTCTCTCGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis