Browse Element(s) Details


Os.5052.1.S1_at

Description gb:AK063490.1
DB_XREF= gi:32973508
TID=Os.5052.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C09, full insert sequence.
FL= gb:AK063490.1 gb:AK101863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3645011/11Ferroportin1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36390Os.38309.1.S1_at11/116+21371366..21373329expressed protein
LOC_Os06g36400OsAffx.15777.1.S1_at1/116+21372861..21376315HAD superfamily phosphatase containing protein, expressed
LOC_Os06g36410OsAffx.15778.1.S1_at10/116+21377262..21378337hypothetical protein
LOC_Os06g36420OsAffx.25936.1.S1_s_at8/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.7.S1_s_at7/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.2.S1_x_at4/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.5.S1_x_at2/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36430NANA6+21390529..21391513hypothetical protein
LOC_Os06g36440NANA6+21391678..21393665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36450Os.5052.1.S1_at11/116+21396009..21398399Ferroportin1 family protein, expressed
LOC_Os06g36460OsAffx.27964.1.S1_at9/116+21399839..21400751hypothetical protein
LOC_Os06g36470Os.35344.18.S1_x_at11/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36470Os.35344.3.S1_x_at9/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36470OsAffx.22940.5.S1_x_at3/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36480OsAffx.15779.1.S1_at11/116+21413177..21420657No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5052.1.S1_at--962--7991Chr06:21397468..21397492 (25 bp)
GGATGTTCGACCTAGCCGTGATGCA
LOC_Os06g36450
Os.5052.1.S1_at--667--5471Chr06:21397547..21397571 (25 bp)
GAACTCGCTGCAGTCCATGTTCGAC
LOC_Os06g36450
Os.5052.1.S1_at--622--9091Chr06:21397573..21397597 (25 bp)
TGCTCACCTACGTCATGGGCATCAT
LOC_Os06g36450
Os.5052.1.S1_at--519--5811Chr06:21397605..21397832 (25 bp)
GACCCCAGGGATTTCGGCGAGCTGA
LOC_Os06g36450
Os.5052.1.S1_at--1082--9151Chr06:21397859..21397883 (25 bp)
TGCGCGGCGGCAATGTACACGATGC
LOC_Os06g36450
Os.5052.1.S1_at--224--6191Chr06:21397897..21397921 (25 bp)
GAGGAAGCATCTGTTCCATCTCGAC
LOC_Os06g36450
Os.5052.1.S1_at--1000--991Chr06:21397922..21397945 (24 bp)
AGGATCCTGCCCAAGATGAACTGGA
LOC_Os06g36450
Os.5052.1.S1_at--662--10771Chr06:21398067..21398091 (25 bp)
TTGATATGGCATCCCGTGATCGATA
LOC_Os06g36450
Os.5052.1.S1_at--121--3131Chr06:21398176..21398200 (25 bp)
AATTTTAGACCTGTTCACTGGAACT
LOC_Os06g36450
Os.5052.1.S1_at--662--5972Chr06:21398227..21398251 (25 bp)
GAGAAATGCCACATGTTCCATCCAA
LOC_Os06g36450
Os.5052.1.S1_at--355--10191Chr06:21398293..21398317 (25 bp)
TATATAAGTACTCGCTTGATCCCAT
LOC_Os06g36450
Target Sequence 
GGATGTTCGACCTAGCCGTGATGCAGCTGATNCAGGACGGCGTCCCGGAGAGCGACCGGTGCGTCGTCGGCNGGCGTGCA
NGAACTCGCTGCAGTCCATGTTCGACCTGCTCACCTACGTCATGGGCATCATCGTCTCCGACCCCAGGGATTTCGGCGAG
CTGATCGTGCTGTCCTTCTTTCTCGTGACCTGCGCGGCGGCAATGTACACGATGCATGTGTACCGGGTGAGGAAGCATCT
GTTCCATCTCGACAGGATCCTGCCCAAGATGAACTGGATCAAAGCTTCTTGATATGGCATCCCGTGATCGATAATGATGA
TTCATCAGTGATTTTCTCCAGCAAATTAGTACTGATCAATGCTGGATACTGTACAATTATCTGCTTTGGTTTACTTCAAT
TTTAGACCTGTTCACTGGAACTTTTGCTCAAAAGATTTGTGGCATCTGGAGAAATGCCACATGTTCCATCCAACTGGGGC
TTGAAGAATCTCCATGTAATTAACCTTACAATAATATATAAGTACTCGCTTGATCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis